FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0789, 354 aa 1>>>pF1KE0789 354 - 354 aa - 354 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.6736+/-0.00095; mu= -3.7512+/- 0.058 mean_var=401.8461+/-82.083, 0's: 0 Z-trim(117.6): 94 B-trim: 0 in 0/54 Lambda= 0.063980 statistics sampled from 18289 (18389) to 18289 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.565), width: 16 Scan time: 2.460 The best scores are: opt bits E(32554) CCDS42855.1 4 gene_id:644524|Hs108|chr20 ( 354) 2425 237.0 1.9e-62 CCDS9659.1 1 gene_id:7080|Hs108|chr14 ( 371) 882 94.6 1.4e-19 CCDS41945.1 1 gene_id:7080|Hs108|chr14 ( 401) 882 94.6 1.5e-19 >>CCDS42855.1 4 gene_id:644524|Hs108|chr20 (354 aa) initn: 2425 init1: 2425 opt: 2425 Z-score: 1234.8 bits: 237.0 E(32554): 1.9e-62 Smith-Waterman score: 2425; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354) 10 20 30 40 50 60 pF1KE0 MSLSPKHTTPFSVSDILSPIEETYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MSLSPKHTTPFSVSDILSPIEETYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 TVAGMQPSHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQFPHGAMGSYCNGGLGNMGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 TVAGMQPSHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQFPHGAMGSYCNGGLGNMGE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 LPAYTDGMRGGAATGWYGANPDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGPLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 LPAYTDGMRGGAATGWYGANPDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGPLH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 AAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 AAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 RYKMKRQAKDKAAQQLQQEGGLGPPPPPPPSPRRVAVPVLVKDGKPCQNGASTPTPGQAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 RYKMKRQAKDKAAQQLQQEGGLGPPPPPPPSPRRVAVPVLVKDGKPCQNGASTPTPGQAG 250 260 270 280 290 300 310 320 330 340 350 pF1KE0 PQPPAPTPAPELEELSPSPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 PQPPAPTPAPELEELSPSPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW 310 320 330 340 350 >>CCDS9659.1 1 gene_id:7080|Hs108|chr14 (371 aa) initn: 953 init1: 470 opt: 882 Z-score: 464.8 bits: 94.6 E(32554): 1.4e-19 Smith-Waterman score: 1199; 58.8% identity (73.7% similar) in 354 aa overlap (1-341:1-322) 10 20 30 40 50 60 pF1KE0 MSLSPKHTTPFSVSDILSPIEETYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAA ::.::::::::::::::::.::.::: . :.:. ::::::.: .: :: CCDS96 MSMSPKHTTPFSVSDILSPLEESYKKVG--MEGG--GLGAPLAAYRQGQAAPP------- 10 20 30 40 70 80 90 100 110 pF1KE0 TVAGMQPSHAMAGHNAAAAAAAAAAAAAAAATYHMPP-GVSQFPHGAMGSYCNGGLGNMG .:.:: .::. ::..:..:: ::: :: :. :.:.:.::::.::::. CCDS96 -TAAMQ-QHAV-GHHGAVTAA-----------YHMTAAGVPQLSHSAVGGYCNGNLGNMS 50 60 70 80 90 120 130 140 150 160 170 pF1KE0 ELPAYTDGMRGGAA-TGWYGANPDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGP ::: : : ::..:. ::::::::::. .:::::::..:.:..:::.: ...:..:...: CCDS96 ELPPYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAP 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE0 LHAAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ : .:::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 L-----PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ 160 170 180 190 200 210 240 250 260 270 280 pF1KE0 NHRYKMKRQAKDKAAQQ-LQQE-------GGLGPPPPPPP---SPRRVAVPVLVKDGKPC ::::::::::::::::: :::. :: : : ::::::::::::::::: CCDS96 NHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPC 220 230 240 250 260 270 290 300 310 320 330 340 pF1KE0 QNGASTPTPGQAGPQPPAPTPAPELEELSPSPPALHGPGGGLAALDAAAGEYSGGVLGAN : :: :.:: :. : : : . . . . : . :.: :.: : :. : CCDS96 QAGA--PAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSP 280 290 300 310 320 350 pF1KE0 LLYGRTW CCDS96 DLAHHAASPAALQGQVSSLSHLNSSGSDYGTMSCSTLLYGRTW 330 340 350 360 370 >>CCDS41945.1 1 gene_id:7080|Hs108|chr14 (401 aa) initn: 953 init1: 470 opt: 882 Z-score: 464.4 bits: 94.6 E(32554): 1.5e-19 Smith-Waterman score: 1199; 58.8% identity (73.7% similar) in 354 aa overlap (1-341:31-352) 10 20 30 pF1KE0 MSLSPKHTTPFSVSDILSPIEETYKKFSGA ::.::::::::::::::::.::.::: . CCDS41 MWSGGSGKARGWEAAAGGRSSPGRLSRRRIMSMSPKHTTPFSVSDILSPLEESYKKVG-- 10 20 30 40 50 40 50 60 70 80 90 pF1KE0 MDGAPPGLGAPLGAAAAYRAPPPGPSSQAATVAGMQPSHAMAGHNAAAAAAAAAAAAAAA :.:. ::::::.: .: :: .:.:: .::. ::..:..:: CCDS41 MEGG--GLGAPLAAYRQGQAAPP--------TAAMQ-QHAV-GHHGAVTAA--------- 60 70 80 90 100 110 120 130 140 pF1KE0 ATYHMPP-GVSQFPHGAMGSYCNGGLGNMGELPAYTDGMRGGAA-TGWYGANPDPRYSSI ::: :: :. :.:.:.::::.::::.::: : : ::..:. ::::::::::. .: CCDS41 --YHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDPRFPAI 100 110 120 130 140 150 150 160 170 180 190 200 pF1KE0 SRFMGPSAGVNVAGMGSLTGIADAAKSLGPLHAAAAAAAPRRKRRVLFSQAQVYELERRF ::::::..:.:..:::.: ...:..:...:: .:::::::::::::::::::::: CCDS41 SRFMGPASGMNMSGMGGLGSLGDVSKNMAPL-----PSAPRRKRRVLFSQAQVYELERRF 160 170 180 190 200 210 210 220 230 240 250 260 pF1KE0 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQ-LQQE-------G ::::::::::::::::::::::::::::::::::::::::::::::: :::. : CCDS41 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG 220 230 240 250 260 270 270 280 290 300 310 pF1KE0 GLGPPPPPPP---SPRRVAVPVLVKDGKPCQNGASTPTPGQAGPQPPAPTPAPELEELSP : : : :::::::::::::::::: :: :.:: :. : : : . . . CCDS41 GTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGA--PAPGAASLQGHAQQQAQHQAQAAQ 280 290 300 310 320 320 330 340 350 pF1KE0 SPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW . : . :.: :.: : :. : CCDS41 AAAAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYG 330 340 350 360 370 380 354 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:28:50 2016 done: Tue Nov 8 04:28:50 2016 Total Scan time: 2.460 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]