FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1300, 572 aa 1>>>pF1KE1300 572 - 572 aa - 572 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2720+/-0.000743; mu= 15.2078+/- 0.044 mean_var=99.0894+/-19.950, 0's: 0 Z-trim(111.8): 21 B-trim: 98 in 1/51 Lambda= 0.128843 statistics sampled from 12613 (12630) to 12613 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.388), width: 16 Scan time: 3.620 The best scores are: opt bits E(32554) CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2 ( 572) 4077 768.1 0 CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3 ( 232) 325 70.5 2.7e-12 >>CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2 (572 aa) initn: 4077 init1: 4077 opt: 4077 Z-score: 4097.8 bits: 768.1 E(32554): 0 Smith-Waterman score: 4077; 100.0% identity (100.0% similar) in 572 aa overlap (1-572:1-572) 10 20 30 40 50 60 pF1KE1 MDRAGADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MDRAGADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHCP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAPGDCQVRPPGEQPFLSRLVLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 GTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAPGDCQVRPPGEQPFLSRLVLH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ILQDCYGDGPGPARHPREAYEGCCEACELGVCFLQKAPDPAWSANATKGNFPATAWGGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 ILQDCYGDGPGPARHPREAYEGCCEACELGVCFLQKAPDPAWSANATKGNFPATAWGGTG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAGASLPVTGSCEALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 TVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAGASLPVTGSCEALV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 IGQGSIFLSGDSVAMPGGKGFPVAIGDPLFHGPGLLGSSIQTFELKGFLFKGRGSLCSPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 IGQGSIFLSGDSVAMPGGKGFPVAIGDPLFHGPGLLGSSIQTFELKGFLFKGRGSLCSPV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 GVAQGWGPISLNNGLVPVGKHTPTVFYCVGLSASGEGSLTFPSSLTSIFTNTLSEPTDGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 GVAQGWGPISLNNGLVPVGKHTPTVFYCVGLSASGEGSLTFPSSLTSIFTNTLSEPTDGP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 VATKEASITFPFIFTDVKDAVAEVAEGNGKEGGGQGLVPVGHDALPETNAGGLPSQVKGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 VATKEASITFPFIFTDVKDAVAEVAEGNGKEGGGQGLVPVGHDALPETNAGGLPSQVKGS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 LALPFPADVQGKDAFTDITEGKEKEGGLVTAGHDAPLEANAEGPITVSEGCITIPFAVFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 LALPFPADVQGKDAFTDITEGKEKEGGLVTAGHDAPLEANAEGPITVSEGCITIPFAVFD 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 VIKRKGGGHVAYGPQGNGCFSQGYYQKRQLRSRFHKARCGCRREEDERPGRACRRPHAEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 VIKRKGGGHVAYGPQGNGCFSQGYYQKRQLRSRFHKARCGCRREEDERPGRACRRPHAEP 490 500 510 520 530 540 550 560 570 pF1KE1 YEDFWIWVSMTVCVFWLMCMCRLNPGIYPQQV :::::::::::::::::::::::::::::::: CCDS42 YEDFWIWVSMTVCVFWLMCMCRLNPGIYPQQV 550 560 570 >>CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3 (232 aa) initn: 351 init1: 273 opt: 325 Z-score: 334.3 bits: 70.5 E(32554): 2.7e-12 Smith-Waterman score: 335; 37.3% identity (59.6% similar) in 161 aa overlap (4-152:2-162) 10 20 30 40 50 pF1KE1 MDRAG-ADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHC :: ...: . : : : :: :.: :...:.:. : : .:: ..:.::. : CCDS27 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSC 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 PGTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAP--GDCQVRPPGEQPFLSRL .: ::.: ::::. :.. . :: ::::.. :::. :: : : . . . .:. : CCDS27 SRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNL 60 70 80 90 100 110 120 130 140 150 160 pF1KE1 VLHILQDCY-GDGPGPARHP--RE-AYEG-----CCEACELGVCFLQKAPDPAWSANATK :..::. :: : . : .. . :: :::: : : CCDS27 VFRILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQTPR 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE1 GNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAGA CCDS27 VHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI 180 190 200 210 220 230 572 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 10:59:38 2016 done: Sun Nov 6 10:59:39 2016 Total Scan time: 3.620 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]