FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3409, 305 aa 1>>>pF1KE3409 305 - 305 aa - 305 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.7262+/-0.00116; mu= -12.1722+/- 0.065 mean_var=445.1134+/-106.085, 0's: 0 Z-trim(110.0): 235 B-trim: 0 in 0/53 Lambda= 0.060791 statistics sampled from 11072 (11300) to 11072 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.347), width: 16 Scan time: 2.080 The best scores are: opt bits E(32554) CCDS42822.1 STK16 gene_id:8576|Hs108|chr2 ( 305) 2106 199.3 3.2e-51 CCDS82573.1 STK16 gene_id:8576|Hs108|chr2 ( 273) 1291 127.7 9.7e-30 >>CCDS42822.1 STK16 gene_id:8576|Hs108|chr2 (305 aa) initn: 2106 init1: 2106 opt: 2106 Z-score: 1033.1 bits: 199.3 E(32554): 3.2e-51 Smith-Waterman score: 2106; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305) 10 20 30 40 50 60 pF1KE3 MGHALCVCSRGTVIIDNKRYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MGHALCVCSRGTVIIDNKRYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDRE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 EAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 TEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 TEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 RQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 RQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 KGDSVALAVQNQLSIPQSPRHSSALRQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 KGDSVALAVQNQLSIPQSPRHSSALRQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ 250 260 270 280 290 300 pF1KE3 HTTQI ::::: CCDS42 HTTQI >>CCDS82573.1 STK16 gene_id:8576|Hs108|chr2 (273 aa) initn: 1859 init1: 1291 opt: 1291 Z-score: 647.4 bits: 127.7 E(32554): 9.7e-30 Smith-Waterman score: 1799; 89.5% identity (89.5% similar) in 305 aa overlap (1-305:1-273) 10 20 30 40 50 60 pF1KE3 MGHALCVCSRGTVIIDNKRYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MGHALCVCSRGTVIIDNKRYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDRE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 EAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 TEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 TEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 RQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQ ::::::: ::::::::::::::::::::: CCDS82 RQALTLQ--------------------------------SLGCVLYAMMFGEGPYDMVFQ 190 200 250 260 270 280 290 300 pF1KE3 KGDSVALAVQNQLSIPQSPRHSSALRQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 KGDSVALAVQNQLSIPQSPRHSSALRQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ 210 220 230 240 250 260 pF1KE3 HTTQI ::::: CCDS82 HTTQI 270 305 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:09:03 2016 done: Sun Nov 6 05:09:03 2016 Total Scan time: 2.080 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]