FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2355, 962 aa
  1>>>pF1KE2355 962 - 962 aa - 962 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.9472+/-0.00115; mu= -20.4992+/- 0.069
 mean_var=609.0054+/-126.682, 0's: 0 Z-trim(117.2): 101  B-trim: 189 in 1/50
 Lambda= 0.051971
 statistics sampled from 17777 (17873) to 17777 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.549), width:  16
 Scan time:  5.480

The best scores are:                                      opt bits E(32554)
CCDS42720.1 KIAA1211L gene_id:343990|Hs108|chr2    ( 962) 6550 506.5  1e-142


>>CCDS42720.1 KIAA1211L gene_id:343990|Hs108|chr2         (962 aa)
 initn: 6550 init1: 6550 opt: 6550  Z-score: 2675.6  bits: 506.5 E(32554): 1e-142
Smith-Waterman score: 6550; 100.0% identity (100.0% similar) in 962 aa overlap (1-962:1-962)

               10        20        30        40        50        60
pF1KE2 MISTRVMDIKLREAAEGLGEDSTGKKKSKFKTFKKFFGKKKRKESPSSTGSSTWKQSQTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MISTRVMDIKLREAAEGLGEDSTGKKKSKFKTFKKFFGKKKRKESPSSTGSSTWKQSQTR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NEVIAIESGPVGYDSEDELEESRGTLGSRALSHDSIFIPESGQDATRPVRVFSQENVCDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NEVIAIESGPVGYDSEDELEESRGTLGSRALSHDSIFIPESGQDATRPVRVFSQENVCDR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 IKALQLKIQCNVKMGPPPPPGGLPAKRGEDAGMSSEDDGLPRSPPEMSLLHDVGPGTTIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IKALQLKIQCNVKMGPPPPPGGLPAKRGEDAGMSSEDDGLPRSPPEMSLLHDVGPGTTIK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 VSVVSPDHVSDSTVSARISDNSLAPVADFSYPAESSSCLDNSAAKHKLQVKPRNQRSSKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VSVVSPDHVSDSTVSARISDNSLAPVADFSYPAESSSCLDNSAAKHKLQVKPRNQRSSKM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 RRLSSRAQSESLSDLTCTPEEEENEEKPLLEVSPEERPSSGQQDVAPDRGPEPGPPAPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RRLSSRAQSESLSDLTCTPEEEENEEKPLLEVSPEERPSSGQQDVAPDRGPEPGPPAPLP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 PPGGARARRARLQHSSALTASVEEGGVPGEDPSSRPATPELAEPESAPTLRVEPPSPPEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PPGGARARRARLQHSSALTASVEEGGVPGEDPSSRPATPELAEPESAPTLRVEPPSPPEG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 PPNPGPDGGKQDGEAPPAGPCAPATDKAEEVVCAPEDVASPFPTAIPEGDTTPPETDPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PPNPGPDGGKQDGEAPPAGPCAPATDKAEEVVCAPEDVASPFPTAIPEGDTTPPETDPAA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 TSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGAGTEPERIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGAGTEPERIG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 TEPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TEPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 KAERAEAPPAGAERAAPERKAERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KAERAEAPPAGAERAAPERKAERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 ARSGPVWRSEAALDDLQGLPEPQHAKPGPRKLAERGPQDSGDRAASPAGPRKSPQEAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ARSGPVWRSEAALDDLQGLPEPQHAKPGPRKLAERGPQDSGDRAASPAGPRKSPQEAAAA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE2 PGTREPCPAAQEPAPSEDRNPFPVKLRSTSLSLKYRDGASQEVKGVKRYSAEVRLERSLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PGTREPCPAAQEPAPSEDRNPFPVKLRSTSLSLKYRDGASQEVKGVKRYSAEVRLERSLT
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE2 VLPKEEKCPLGTAPALRGTRAPSDQGKGKARPPEPLSSKPPLPRKPLLQSFTLPHQPAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VLPKEEKCPLGTAPALRGTRAPSDQGKGKARPPEPLSSKPPLPRKPLLQSFTLPHQPAPP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE2 DAGPGEREPRKEPRTAEKRPLRRGAEKSLPPAATGPGADGQPAPPWITVTRQKRRGTLDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DAGPGEREPRKEPRTAEKRPLRRGAEKSLPPAATGPGADGQPAPPWITVTRQKRRGTLDQ
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE2 PPNQEDKPGARTLKSEPGKQAKVPERGQEPVKQADFVRSKSFLITPVKPAVDRKQGAKLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PPNQEDKPGARTLKSEPGKQAKVPERGQEPVKQADFVRSKSFLITPVKPAVDRKQGAKLN
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE2 FKEGLQRGISLSHQNLAQSAVMMEKELHQLKRASYASTDQPSWMELARKKSQAWSDMPQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FKEGLQRGISLSHQNLAQSAVMMEKELHQLKRASYASTDQPSWMELARKKSQAWSDMPQI
              910       920       930       940       950       960

         
pF1KE2 IK
       ::
CCDS42 IK
         




962 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:01:52 2016 done: Sun Nov  6 11:01:53 2016
 Total Scan time:  5.480 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]