FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1691, 200 aa 1>>>pF1KE1691 200 - 200 aa - 200 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6127+/-0.000303; mu= 17.8382+/- 0.019 mean_var=64.3395+/-12.821, 0's: 0 Z-trim(117.9): 23 B-trim: 2474 in 2/56 Lambda= 0.159895 statistics sampled from 30387 (30410) to 30387 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.357), width: 16 Scan time: 6.520 The best scores are: opt bits E(85289) NP_742150 (OMIM: 607401) interferon lambda-2 [Homo ( 200) 1352 319.7 1.9e-87 XP_005258822 (OMIM: 607402,609532) PREDICTED: inte ( 200) 1294 306.4 2e-83 NP_742151 (OMIM: 607402,609532) interferon lambda- ( 196) 1268 300.4 1.3e-81 NP_742152 (OMIM: 607403) interferon lambda-1 precu ( 200) 884 211.8 6.1e-55 NP_001263183 (OMIM: 615090) interferon lambda-4 pr ( 179) 144 41.0 0.0014 >>NP_742150 (OMIM: 607401) interferon lambda-2 [Homo sap (200 aa) initn: 1352 init1: 1352 opt: 1352 Z-score: 1690.9 bits: 319.7 E(85289): 1.9e-87 Smith-Waterman score: 1352; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_742 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_742 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_742 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF 130 140 150 160 170 180 190 200 pF1KE1 NLFRLLTRDLNCVASGDLCV :::::::::::::::::::: NP_742 NLFRLLTRDLNCVASGDLCV 190 200 >>XP_005258822 (OMIM: 607402,609532) PREDICTED: interfer (200 aa) initn: 1294 init1: 1294 opt: 1294 Z-score: 1618.6 bits: 306.4 E(85289): 2e-83 Smith-Waterman score: 1294; 96.0% identity (99.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA ::::::::: :::::::::::::::::::::.:::::::::::::::::::::::::::: XP_005 MKLDMTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV :::::::::::::.:.:::::::::::::::::::.::::::::::::::::::::::: XP_005 KDALEESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF ::::::::::::::::.::::::::::::::::::::::.:::::::::::::::::::: XP_005 DVLDQPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTF 130 140 150 160 170 180 190 200 pF1KE1 NLFRLLTRDLNCVASGDLCV :::::::::::::::::::: XP_005 NLFRLLTRDLNCVASGDLCV 190 200 >>NP_742151 (OMIM: 607402,609532) interferon lambda-3 pr (196 aa) initn: 1268 init1: 1268 opt: 1268 Z-score: 1586.3 bits: 300.4 E(85289): 1.3e-81 Smith-Waterman score: 1268; 95.9% identity (99.0% similar) in 196 aa overlap (5-200:1-196) 10 20 30 40 50 60 pF1KE1 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA ::::: :::::::::::::::::::::.:::::::::::::::::::::::::::: NP_742 MTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRA 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV :::::::::::::.:.:::::::::::::::::::.::::::::::::::::::::::: NP_742 KDALEESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALG 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF ::::::::::::::::.::::::::::::::::::::::.:::::::::::::::::::: NP_742 DVLDQPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTF 120 130 140 150 160 170 190 200 pF1KE1 NLFRLLTRDLNCVASGDLCV :::::::::::::::::::: NP_742 NLFRLLTRDLNCVASGDLCV 180 190 >>NP_742152 (OMIM: 607403) interferon lambda-1 precursor (200 aa) initn: 930 init1: 509 opt: 884 Z-score: 1107.4 bits: 211.8 E(85289): 6.1e-55 Smith-Waterman score: 884; 72.3% identity (85.9% similar) in 191 aa overlap (10-200:6-191) 10 20 30 40 50 60 pF1KE1 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA : ::: .. :.:.: ::... ..::::..::::::::: .::.: NP_742 MAAAWTVVLVTLVLGLAVAGPVPTSK---PTTTGKGCHIGRFKSLSPQELASFKKA 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV .::::::: ::. : : .:: .:::: :::::::.:::::::::::::::.: ::: NP_742 RDALEESLKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAG--PALE 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF ::::::::::::::::..:::::::::::: ::::::::.:::::::::: ::::::::: NP_742 DVLDQPLHTLHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTF 120 130 140 150 160 170 190 200 pF1KE1 NLFRLLTRDLNCVASGDLCV ::::::::::. ::.:.::. NP_742 NLFRLLTRDLKYVADGNLCLRTSTHPEST 180 190 200 >>NP_001263183 (OMIM: 615090) interferon lambda-4 precur (179 aa) initn: 121 init1: 87 opt: 144 Z-score: 185.5 bits: 41.0 E(85289): 0.0014 Smith-Waterman score: 151; 28.1% identity (50.9% similar) in 167 aa overlap (39-200:25-179) 10 20 30 40 50 60 pF1KE1 CTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRAKDALEESL : : .....:: :. : : : .: :: NP_001 MRPSVWAAVAAGLWVLCTVIAAAPRRCLLSHYRSLEPRTLAAAKALRDRYEEEA 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 L---LKDCRCHSRL-FPRTWDLRQLQVRERPMALEAELALT-LKVLEATADTDPALVDVL : ..: . : :: . .:. : .: .:. .:. :. : . : : NP_001 LSWGQRNCSFRPRRDPPRPSSCARLRHVARGIA-DAQAVLSGLHRSELLPGAGPIL---- 60 70 80 90 100 130 140 150 160 170 180 pF1KE1 DQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTFNLF . : . ::.. : : . .. : .. . .:: : .:::.:::. NP_001 ----ELLAAAGRDVAACLE---LARPGSSRKVPGAQKRRHKPRRADSPRCRKASVVFNLL 110 120 130 140 150 160 190 200 pF1KE1 RLLTRDLNCVASGDLCV :::: .: .: . :. NP_001 RLLTWELRLAAHSGPCL 170 200 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:48:40 2016 done: Sat Nov 5 22:48:41 2016 Total Scan time: 6.520 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]