FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1691, 200 aa 1>>>pF1KE1691 200 - 200 aa - 200 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0774+/-0.000626; mu= 15.0673+/- 0.038 mean_var=65.2476+/-12.587, 0's: 0 Z-trim(110.9): 10 B-trim: 0 in 0/54 Lambda= 0.158779 statistics sampled from 11952 (11959) to 11952 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.367), width: 16 Scan time: 1.930 The best scores are: opt bits E(32554) CCDS42567.1 IFNL2 gene_id:282616|Hs108|chr19 ( 200) 1352 317.7 3.1e-87 CCDS12530.1 IFNL3 gene_id:282617|Hs108|chr19 ( 196) 1268 298.4 1.9e-81 CCDS12531.1 IFNL1 gene_id:282618|Hs108|chr19 ( 200) 884 210.4 5.8e-55 >>CCDS42567.1 IFNL2 gene_id:282616|Hs108|chr19 (200 aa) initn: 1352 init1: 1352 opt: 1352 Z-score: 1679.6 bits: 317.7 E(32554): 3.1e-87 Smith-Waterman score: 1352; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF 130 140 150 160 170 180 190 200 pF1KE1 NLFRLLTRDLNCVASGDLCV :::::::::::::::::::: CCDS42 NLFRLLTRDLNCVASGDLCV 190 200 >>CCDS12530.1 IFNL3 gene_id:282617|Hs108|chr19 (196 aa) initn: 1268 init1: 1268 opt: 1268 Z-score: 1575.8 bits: 298.4 E(32554): 1.9e-81 Smith-Waterman score: 1268; 95.9% identity (99.0% similar) in 196 aa overlap (5-200:1-196) 10 20 30 40 50 60 pF1KE1 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA ::::: :::::::::::::::::::::.:::::::::::::::::::::::::::: CCDS12 MTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRA 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV :::::::::::::.:.:::::::::::::::::::.::::::::::::::::::::::: CCDS12 KDALEESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVLEATADTDPALG 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF ::::::::::::::::.::::::::::::::::::::::.:::::::::::::::::::: CCDS12 DVLDQPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKESPGCLEASVTF 120 130 140 150 160 170 190 200 pF1KE1 NLFRLLTRDLNCVASGDLCV :::::::::::::::::::: CCDS12 NLFRLLTRDLNCVASGDLCV 180 190 >>CCDS12531.1 IFNL1 gene_id:282618|Hs108|chr19 (200 aa) initn: 930 init1: 509 opt: 884 Z-score: 1100.2 bits: 210.4 E(32554): 5.8e-55 Smith-Waterman score: 884; 72.3% identity (85.9% similar) in 191 aa overlap (10-200:6-191) 10 20 30 40 50 60 pF1KE1 MKLDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQAFKRA : ::: .. :.:.: ::... ..::::..::::::::: .::.: CCDS12 MAAAWTVVLVTLVLGLAVAGPVPTSK---PTTTGKGCHIGRFKSLSPQELASFKKA 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 KDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADTDPALV .::::::: ::. : : .:: .:::: :::::::.:::::::::::::::.: ::: CCDS12 RDALEESLKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAG--PALE 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 DVLDQPLHTLHHILSQFRACIQPQPTAGPRTRGRLHHWLYRLQEAPKKESPGCLEASVTF ::::::::::::::::..:::::::::::: ::::::::.:::::::::: ::::::::: CCDS12 DVLDQPLHTLHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTF 120 130 140 150 160 170 190 200 pF1KE1 NLFRLLTRDLNCVASGDLCV ::::::::::. ::.:.::. CCDS12 NLFRLLTRDLKYVADGNLCLRTSTHPEST 180 190 200 200 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:48:39 2016 done: Sat Nov 5 22:48:40 2016 Total Scan time: 1.930 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]