FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5266, 192 aa
  1>>>pF1KE5266 192 - 192 aa - 192 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9629+/-0.000269; mu= 8.8555+/- 0.017
 mean_var=153.9761+/-31.150, 0's: 0 Z-trim(124.3): 15  B-trim: 402 in 3/54
 Lambda= 0.103359
 statistics sampled from 45682 (45698) to 45682 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.536), width:  16
 Scan time:  6.790

The best scores are:                                      opt bits E(85289)
NP_001092092 (OMIM: 608229) nanos homolog 3 [Homo  ( 192) 1348 211.1 8.7e-55
XP_011526266 (OMIM: 608229) PREDICTED: nanos homol ( 196) 1330 208.5 5.7e-54
NP_001025032 (OMIM: 608228) nanos homolog 2 [Homo  ( 138)  355 62.9 2.6e-10
NP_955631 (OMIM: 608226,615413) nanos homolog 1 [H ( 292)  263 49.5   6e-06


>>NP_001092092 (OMIM: 608229) nanos homolog 3 [Homo sapi  (192 aa)
 initn: 1348 init1: 1348 opt: 1348  Z-score: 1104.6  bits: 211.1 E(85289): 8.7e-55
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KE5 MGTFDLWTDYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVPGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGTFDLWTDYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVPGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KDQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 RAHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGFRGAGKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGFRGAGKS
              130       140       150       160       170       180

              190  
pF1KE5 EPSPSCSPSMST
       ::::::::::::
NP_001 EPSPSCSPSMST
              190  

>>XP_011526266 (OMIM: 608229) PREDICTED: nanos homolog 3  (196 aa)
 initn: 1400 init1: 1219 opt: 1330  Z-score: 1089.9  bits: 208.5 E(85289): 5.7e-54
Smith-Waterman score: 1330; 98.0% identity (98.0% similar) in 196 aa overlap (1-192:1-196)

               10        20        30        40        50        60
pF1KE5 MGTFDLWTDYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVPGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGTFDLWTDYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVPGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KDQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRE
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 RAHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAG----FRG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::    :::
XP_011 RAHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGACTGFRG
              130       140       150       160       170       180

        180       190  
pF1KE5 AGKSEPSPSCSPSMST
       ::::::::::::::::
XP_011 AGKSEPSPSCSPSMST
              190      

>>NP_001025032 (OMIM: 608228) nanos homolog 2 [Homo sapi  (138 aa)
 initn: 435 init1: 292 opt: 355  Z-score: 306.2  bits: 62.9 E(85289): 2.6e-10
Smith-Waterman score: 402; 44.0% identity (65.3% similar) in 150 aa overlap (4-153:6-138)

                 10        20        30        40        50        
pF1KE5   MGTFDLWTDYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVP
            ::.: ::..:...: :: ...:   ::  :   ::   :     :.   ... .:
NP_001 MQLPPFDMWKDYFNLSQVVWALIASRG--QRLETQEIEEPSPGP-----PLGQDQGLGAP
               10        20          30        40             50   

       60        70        80        90       100       110        
pF1KE5 GPKDQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGAT
       :         .. .   ::.::::::::: .:.:: ::   : :.::::: :::: ::::
NP_001 G---------ANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGAT
                     60        70        80        90       100    

      120       130       140       150       160       170        
pF1KE5 RERAHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGFRGAG
        ..::: ..:::.: :  :.: .. :::::... :                         
NP_001 GDQAHTLKYCPLNG-GQQSLYRRSGRNSAGRRVKR                         
          110        120       130                                 

      180       190  
pF1KE5 KSEPSPSCSPSMST

>>NP_955631 (OMIM: 608226,615413) nanos homolog 1 [Homo   (292 aa)
 initn: 324 init1: 255 opt: 263  Z-score: 227.8  bits: 49.5 E(85289): 6e-06
Smith-Waterman score: 265; 37.4% identity (55.8% similar) in 147 aa overlap (10-131:122-268)

                                    10        20                 30
pF1KE5                      MGTFDLWTDYLGLAHLVRALSGKEGP------ETR---L
                                     ::: :  .:::    ::      : :   :
NP_955 GPGALGPALGPPDYDEDDDDDSDEPGSRGRYLGSALELRALELCAGPAEAGLLEERFAEL
             100       110       120       130       140       150 

                40           50            60        70            
pF1KE5 SP-QPEPEPML---EPVSALEPMPAPESVP----VPGPKDQKRSLESSPA-------PE-
       ::   .   .:    :..:     . :..:    .:.   . :   .: :       :: 
NP_955 SPFAGRAAAVLLGCAPAAAAAATTTSEATPREERAPAWAAEPRLHAASGAAAARLLKPEL
             160       170       180       190       200       210 

           80        90       100       110       120       130    
pF1KE5 RLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRERAHTRRFCPLTGQG
       ..: ::..: :. :.: .:.::   ::::::.:: :.:: :::. . ::: ..:::.   
NP_955 QVCVFCRNNKEAMALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCPLSKVP
             220       230       240       250       260       270 

          140       150       160       170       180       190  
pF1KE5 YTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGFRGAGKSEPSPSCSPSMST
                                                                 
NP_955 PPPARPPPRSARDGPPGKKLR                                     
             280       290                                       




192 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:16:31 2016 done: Mon Nov  7 23:16:32 2016
 Total Scan time:  6.790 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]