FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5266, 192 aa
  1>>>pF1KE5266 192 - 192 aa - 192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9682+/-0.000646; mu= 9.1726+/- 0.039
 mean_var=155.8669+/-31.526, 0's: 0 Z-trim(117.0): 8  B-trim: 10 in 1/52
 Lambda= 0.102730
 statistics sampled from 17644 (17652) to 17644 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.542), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS42511.1 NANOS3 gene_id:342977|Hs108|chr19      ( 192) 1348 209.9 7.9e-55


>>CCDS42511.1 NANOS3 gene_id:342977|Hs108|chr19           (192 aa)
 initn: 1348 init1: 1348 opt: 1348  Z-score: 1097.8  bits: 209.9 E(32554): 7.9e-55
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KE5 MGTFDLWTDYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVPGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MGTFDLWTDYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVPGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KDQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KDQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 RAHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGFRGAGKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RAHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGFRGAGKS
              130       140       150       160       170       180

              190  
pF1KE5 EPSPSCSPSMST
       ::::::::::::
CCDS42 EPSPSCSPSMST
              190  




192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:16:30 2016 done: Mon Nov  7 23:16:30 2016
 Total Scan time:  2.380 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]