FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4082, 429 aa 1>>>pF1KE4082 429 - 429 aa - 429 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2271+/-0.000822; mu= 10.5639+/- 0.050 mean_var=160.6200+/-32.343, 0's: 0 Z-trim(114.2): 65 B-trim: 87 in 2/50 Lambda= 0.101199 statistics sampled from 14674 (14740) to 14674 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.453), width: 16 Scan time: 3.140 The best scores are: opt bits E(32554) CCDS42475.1 ZNRF4 gene_id:148066|Hs108|chr19 ( 429) 2998 449.2 3.5e-126 CCDS3146.1 RNF13 gene_id:11342|Hs108|chr3 ( 381) 753 121.4 1.5e-27 CCDS11060.1 RNF167 gene_id:26001|Hs108|chr17 ( 350) 735 118.8 8.7e-27 CCDS82040.1 RNF167 gene_id:26001|Hs108|chr17 ( 315) 704 114.2 1.9e-25 >>CCDS42475.1 ZNRF4 gene_id:148066|Hs108|chr19 (429 aa) initn: 2998 init1: 2998 opt: 2998 Z-score: 2378.8 bits: 449.2 E(32554): 3.5e-126 Smith-Waterman score: 2998; 99.5% identity (100.0% similar) in 429 aa overlap (1-429:1-429) 10 20 30 40 50 60 pF1KE4 MPLCRPEHLMPRASRVPVAASLPLSHAVIPTQLPSRPGHRPPGRPRRCPKASCLPPPVGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MPLCRPEHLMPRASRVPVAASLPLSHAVIPTQLPSRPGHRPPGRPRRCPKASCLPPPVGP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 SSTQTAKRVTMGWPRPGRALVAVKALLVLSLLQVPAQAVVRAVLEDNSSSVDFADLPALF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 SSTQTAKRVTMGWPRPGRALVAVKALLVLSLLQVPAQAVVRAVLEDNSSSVDFADLPALF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 GVPLAPEGIRGYLMEVKPANACHPIEAPRLGNRSLGSIALIRRYDCTFDLKVLNAQRAGF ::::::::::::::::::::::::::::::::::::.:.::::::::::::::::::::: CCDS42 GVPLAPEGIRGYLMEVKPANACHPIEAPRLGNRSLGAIVLIRRYDCTFDLKVLNAQRAGF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 EAAIVHNVHSDDLVSMTHVYEDLRGQIAIPSVFVSEAASQDLRVILGCNKSAHALLLPDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 EAAIVHNVHSDDLVSMTHVYEDLRGQIAIPSVFVSEAASQDLRVILGCNKSAHALLLPDD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 PPCHDLGCHPVLTVSWVLGCTLALVVSAFFVLNHLWLWAQACCSHRRPVKTSTCQKAQVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 PPCHDLGCHPVLTVSWVLGCTLALVVSAFFVLNHLWLWAQACCSHRRPVKTSTCQKAQVR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 TFTWHNDLCAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSVAATED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 TFTWHNDLCAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSVAATED 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 SFDSTTYSFRDEDPSLPGHRPPIWAIQVQLRSRRLELLGRASPHCHCSTTSLEAEYTTVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 SFDSTTYSFRDEDPSLPGHRPPIWAIQVQLRSRRLELLGRASPHCHCSTTSLEAEYTTVS 370 380 390 400 410 420 pF1KE4 SAPPEAPGQ ::::::::: CCDS42 SAPPEAPGQ >>CCDS3146.1 RNF13 gene_id:11342|Hs108|chr3 (381 aa) initn: 615 init1: 276 opt: 753 Z-score: 608.1 bits: 121.4 E(32554): 1.5e-27 Smith-Waterman score: 753; 40.8% identity (69.0% similar) in 316 aa overlap (80-389:18-321) 50 60 70 80 90 100 pF1KE4 KASCLPPPVGPSSTQTAKRVTMGWPRPGRALVAVKALLVLSLLQVPAQAVVRAVLEDNSS ...:. . :.:: :..: . : .:.: CCDS31 MLLSIGMLMLSATQVYTILTVQLFAFLNLL--PVEADILAYNFENAS 10 20 30 40 110 120 130 140 150 160 pF1KE4 SVDFADLPALFGVPLAPEGIRGYLMEVKPANACHPIEAPRLGNRSLGS-IALIRRYDCTF .. : :::: :: : ::..:.:.. :: :::.:: : . . : :. :.:::: ::.: CCDS31 QT-FDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNF 50 60 70 80 90 100 170 180 190 200 210 220 pF1KE4 DLKVLNAQRAGFEAAIVHNVHSDDLVSMTHVYEDLRGQIAIPSVFVSEAASQDLRVILGC :.:::::::::..::::::: ::::.:: .. .: :::::..:.....:. . CCDS31 DIKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTY 110 120 130 140 150 160 230 240 250 260 270 280 pF1KE4 NKSAHALLLPDDPPCHDLGCHPVLTVSWVLGCTLALVVSAFFVLNHLWLWAQACCSHRRP .:..: .:.:. . : : . .: : :.: :.. . . .: .: CCDS31 EKGGHLILVPEFSLPLEYYLIPFLII---VGICLILIV-IFMITKFVQDRHRA---RRNR 170 180 190 200 210 290 300 310 320 330 340 pF1KE4 VKTSTCQKAQVRTFTWHN--DLCAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRR .. . .: :. : . :.:::::::::.::.:.::::::.:::::.:::.... .. CCDS31 LRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKT-KK 220 230 240 250 260 270 350 360 370 380 390 400 pF1KE4 SCPVCKQSVAATEDSFDSTTYSFRDEDPSLPGHRP---PIWAIQVQLRSRRLELLGRASP .::::::.:. .. . :: : : ..:. . : : :. ....: CCDS31 TCPVCKQKVVPSQGDSDSDTDSSQEENE-VTEHTPLLRPLASVSAQSFGALSESRSHQNM 280 290 300 310 320 330 410 420 pF1KE4 HCHCSTTSLEAEYTTVSSAPPEAPGQ CCDS31 TESSDYEEDDNEDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV 340 350 360 370 380 >>CCDS11060.1 RNF167 gene_id:26001|Hs108|chr17 (350 aa) initn: 747 init1: 300 opt: 735 Z-score: 594.4 bits: 118.8 E(32554): 8.7e-27 Smith-Waterman score: 785; 39.7% identity (67.5% similar) in 348 aa overlap (95-427:21-342) 70 80 90 100 110 120 pF1KE4 TAKRVTMGWPRPGRALVAVKALLVLSLLQVPAQAVVRAVLEDNSSSVDFADLPALFGVPL :.....::. :...:.::::::::::. : CCDS11 MHPAAFPLPVVVAAVLWGAAPTRGLIRAT-SDHNASMDFADLPALFGATL 10 20 30 40 130 140 150 160 170 180 pF1KE4 APEGIRGYLMEVKPANACHPIEAPRLGNRSLGS--IALIRRYDCTFDLKVLNAQRAGFEA . ::..:.:.:..: ::: :: : . . :: :::.::.::.:::::::::.::. : CCDS11 SQEGLQGFLVEAHPDNACSPIAPPPPAPVN-GSVFIALLRRFDCNFDLKVLNAQKAGYGA 50 60 70 80 90 100 190 200 210 220 230 240 pF1KE4 AIVHNVHSDDLVSMTHVYEDLRGQIAIPSVFVSEAASQDLRVILGCNKSAHALLLPDDPP :.::::.:..:..:. :... :: :::::..: .:. ::... .:.:..::.::. CCDS11 AVVHNVNSNELLNMVWNSEEIQQQIWIPSVFIGERSSEYLRALFVYEKGARVLLVPDNT- 110 120 130 140 150 160 250 260 270 280 290 300 pF1KE4 CHDLGCHPVLTVSWVLGCTLALVVSAFFVLNHLWLWAQACCSHRRPVKTSTCQKAQVRTF :: . .. . ..: :.:...: .. : .::. .. . : :.. . CCDS11 -FPLGYY-LIPFTGIVG-LLVLAMGAVMI--------ARCIQHRKRLQRNRLTKEQLKQI 170 180 190 200 210 310 320 330 340 350 pF1KE4 TWHN-------DLCAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSV :. :.:::::::::.::.:..:::.:.:: .:.:::..:. :..::.::: : CCDS11 PTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQT-RKTCPICKQPV 220 230 240 250 260 270 360 370 380 390 400 410 pF1KE4 ---AATEDSFDSTTYSFRDEDPSLPGHRPPIWAIQVQLRSRRLELLGRASPHCHCSTTSL . ::. . : . .. : . : .: :.: ::: .:: : :: CCDS11 HRGPGDEDQ-EEETQGQEEGDEGEPRDHPA---------SERTPLLG-SSPTLPTSFGSL 280 290 300 310 320 420 pF1KE4 EAE---YTTVSSAPPEAPGQ . :. :: .: CCDS11 APAPLVFPGPSTDPPLSPPSSPVILV 330 340 350 >>CCDS82040.1 RNF167 gene_id:26001|Hs108|chr17 (315 aa) initn: 731 init1: 300 opt: 704 Z-score: 570.5 bits: 114.2 E(32554): 1.9e-25 Smith-Waterman score: 754; 40.1% identity (66.6% similar) in 332 aa overlap (111-427:1-307) 90 100 110 120 130 140 pF1KE4 VAVKALLVLSLLQVPAQAVVRAVLEDNSSSVDFADLPALFGVPLAPEGIRGYLMEVKPAN .::::::::::. :. ::..:.:.:..: : CCDS82 MDFADLPALFGATLSQEGLQGFLVEAHPDN 10 20 30 150 160 170 180 190 pF1KE4 ACHPIEAPRLGNRSLGS--IALIRRYDCTFDLKVLNAQRAGFEAAIVHNVHSDDLVSMTH :: :: : . . :: :::.::.::.:::::::::.::. ::.::::.:..:..:. CCDS82 ACSPIAPPPPAPVN-GSVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVW 40 50 60 70 80 200 210 220 230 240 250 pF1KE4 VYEDLRGQIAIPSVFVSEAASQDLRVILGCNKSAHALLLPDDPPCHDLGCHPVLTVSWVL :... :: :::::..: .:. ::... .:.:..::.::. :: . .. . .. CCDS82 NSEEIQQQIWIPSVFIGERSSEYLRALFVYEKGARVLLVPDNT--FPLG-YYLIPFTGIV 90 100 110 120 130 140 260 270 280 290 300 310 pF1KE4 GCTLALVVSAFFVLNHLWLWAQACCSHRRPVKTSTCQKAQVRTFTWHN-------DLCAI : :.:...: .. : .::. .. . : :.. . :. :.::: CCDS82 G-LLVLAMGAVMIAR--------CIQHRKRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAI 150 160 170 180 190 320 330 340 350 360 pF1KE4 CLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSV---AATEDSFDSTTYS ::::::.::.:..:::.:.:: .:.:::..:. :..::.::: : . ::. . : . CCDS82 CLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQT-RKTCPICKQPVHRGPGDEDQ-EEETQG 200 210 220 230 240 250 370 380 390 400 410 420 pF1KE4 FRDEDPSLPGHRPPIWAIQVQLRSRRLELLGRASPHCHCSTTSLEAE---YTTVSSAPPE .. : . : .: :.: ::: .:: : :: . :. :: CCDS82 QEEGDEGEPRDHPA---------SERTPLLG-SSPTLPTSFGSLAPAPLVFPGPSTDPPL 260 270 280 290 300 pF1KE4 APGQ .: CCDS82 SPPSSPVILV 310 429 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 02:08:28 2016 done: Tue Nov 8 02:08:28 2016 Total Scan time: 3.140 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]