FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3223, 506 aa 1>>>pF1KE3223 506 - 506 aa - 506 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8613+/-0.00104; mu= 11.0170+/- 0.063 mean_var=99.0878+/-19.402, 0's: 0 Z-trim(106.1): 23 B-trim: 63 in 1/52 Lambda= 0.128844 statistics sampled from 8773 (8785) to 8773 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.27), width: 16 Scan time: 3.470 The best scores are: opt bits E(32554) CCDS42356.1 CDK5RAP3 gene_id:80279|Hs108|chr17 ( 506) 3268 618.2 6.8e-177 CCDS62232.1 CDK5RAP3 gene_id:80279|Hs108|chr17 ( 531) 3256 615.9 3.4e-176 >>CCDS42356.1 CDK5RAP3 gene_id:80279|Hs108|chr17 (506 aa) initn: 3268 init1: 3268 opt: 3268 Z-score: 3289.2 bits: 618.2 E(32554): 6.8e-177 Smith-Waterman score: 3268; 100.0% identity (100.0% similar) in 506 aa overlap (1-506:1-506) 10 20 30 40 50 60 pF1KE3 MEDHQHVPIDIQTSKLLDWLVDRRHCSLKWQSLVLTIREKINAAIQDMPESEEIAQLLSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MEDHQHVPIDIQTSKLLDWLVDRRHCSLKWQSLVLTIREKINAAIQDMPESEEIAQLLSG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMKDWQEIIALYEKDNTYLVELSSLLVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 SYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMKDWQEIIALYEKDNTYLVELSSLLVR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 NVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAAEMREQFYHSCKQYGITGENVRGELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 NVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAAEMREQFYHSCKQYGITGENVRGELL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 ALVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFVCESPTEQVLPMLRFVQKRGNSTVYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 ALVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFVCESPTEQVLPMLRFVQKRGNSTVYE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 WRTGTEPSVVERPHLEELPEQVAEDAIDWGDFGVEAVSEGTDSGISAEAAGIDWGIFPES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 WRTGTEPSVVERPHLEELPEQVAEDAIDWGDFGVEAVSEGTDSGISAEAAGIDWGIFPES 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 DSKDPGGDGIDWGDDAVALQITVLEAGTQAPEGVARGPDALTLLEYTETRNQFLDELMEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 DSKDPGGDGIDWGDDAVALQITVLEAGTQAPEGVARGPDALTLLEYTETRNQFLDELMEL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 EIFLAQRAVELSEEADVLSVSQFQLAPAILQGQTKEKMVTMVSVLEDLIGKLTSLQLQHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 EIFLAQRAVELSEEADVLSVSQFQLAPAILQGQTKEKMVTMVSVLEDLIGKLTSLQLQHL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 FMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVQKQQEALEEQAALEPKLDLLLEKTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 FMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVQKQQEALEEQAALEPKLDLLLEKTK 430 440 450 460 470 480 490 500 pF1KE3 ELQKLIEADISKRYSGRPVNLMGTSL :::::::::::::::::::::::::: CCDS42 ELQKLIEADISKRYSGRPVNLMGTSL 490 500 >>CCDS62232.1 CDK5RAP3 gene_id:80279|Hs108|chr17 (531 aa) initn: 3256 init1: 3256 opt: 3256 Z-score: 3276.8 bits: 615.9 E(32554): 3.4e-176 Smith-Waterman score: 3256; 99.8% identity (100.0% similar) in 505 aa overlap (2-506:27-531) 10 20 30 pF1KE3 MEDHQHVPIDIQTSKLLDWLVDRRHCSLKWQSLVL .::::::::::::::::::::::::::::::::: CCDS62 MRRQSMTSATRDLHTALDGKATQGGKKDHQHVPIDIQTSKLLDWLVDRRHCSLKWQSLVL 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 TIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 TIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMK 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 DWQEIIALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 DWQEIIALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAA 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE3 EMREQFYHSCKQYGITGENVRGELLALVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 EMREQFYHSCKQYGITGENVRGELLALVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFV 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE3 CESPTEQVLPMLRFVQKRGNSTVYEWRTGTEPSVVERPHLEELPEQVAEDAIDWGDFGVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 CESPTEQVLPMLRFVQKRGNSTVYEWRTGTEPSVVERPHLEELPEQVAEDAIDWGDFGVE 250 260 270 280 290 300 280 290 300 310 320 330 pF1KE3 AVSEGTDSGISAEAAGIDWGIFPESDSKDPGGDGIDWGDDAVALQITVLEAGTQAPEGVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 AVSEGTDSGISAEAAGIDWGIFPESDSKDPGGDGIDWGDDAVALQITVLEAGTQAPEGVA 310 320 330 340 350 360 340 350 360 370 380 390 pF1KE3 RGPDALTLLEYTETRNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPAILQGQTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 RGPDALTLLEYTETRNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPAILQGQTK 370 380 390 400 410 420 400 410 420 430 440 450 pF1KE3 EKMVTMVSVLEDLIGKLTSLQLQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 EKMVTMVSVLEDLIGKLTSLQLQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMV 430 440 450 460 470 480 460 470 480 490 500 pF1KE3 QKQQEALEEQAALEPKLDLLLEKTKELQKLIEADISKRYSGRPVNLMGTSL ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 QKQQEALEEQAALEPKLDLLLEKTKELQKLIEADISKRYSGRPVNLMGTSL 490 500 510 520 530 506 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:01:23 2016 done: Sun Nov 6 06:01:23 2016 Total Scan time: 3.470 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]