FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2242, 347 aa 1>>>pF1KE2242 347 - 347 aa - 347 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5709+/-0.00069; mu= 11.7374+/- 0.042 mean_var=102.4929+/-20.138, 0's: 0 Z-trim(113.2): 15 B-trim: 0 in 0/51 Lambda= 0.126686 statistics sampled from 13835 (13846) to 13835 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.425), width: 16 Scan time: 3.020 The best scores are: opt bits E(32554) CCDS42345.1 ATXN7L3 gene_id:56970|Hs108|chr17 ( 347) 2349 439.1 2.6e-123 CCDS45697.1 ATXN7L3 gene_id:56970|Hs108|chr17 ( 354) 2325 434.7 5.5e-122 CCDS53815.1 ATXN7L3B gene_id:552889|Hs108|chr12 ( 97) 316 67.2 6.4e-12 >>CCDS42345.1 ATXN7L3 gene_id:56970|Hs108|chr17 (347 aa) initn: 2349 init1: 2349 opt: 2349 Z-score: 2327.4 bits: 439.1 E(32554): 2.6e-123 Smith-Waterman score: 2349; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347) 10 20 30 40 50 60 pF1KE2 MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 FEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ANSNNMNKSESDQEDNDDINDNDWSYGSEKKAKKRKSDKNPNSPRRSKSLKHKNGELSNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 ANSNNMNKSESDQEDNDDINDNDWSYGSEKKAKKRKSDKNPNSPRRSKSLKHKNGELSNS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 DPFKYNNSTGISYETLGPEELRSLLTTQCGVISEHTKKMCTRSLRCPQHTDEQRRTVRIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 DPFKYNNSTGISYETLGPEELRSLLTTQCGVISEHTKKMCTRSLRCPQHTDEQRRTVRIY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 FLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDLSPSDSGSSKTSENQGWGLGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 FLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDLSPSDSGSSKTSENQGWGLGT 250 260 270 280 290 300 310 320 330 340 pF1KE2 NSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIYDDIN ::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 NSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIYDDIN 310 320 330 340 >>CCDS45697.1 ATXN7L3 gene_id:56970|Hs108|chr17 (354 aa) initn: 1254 init1: 1254 opt: 2325 Z-score: 2303.5 bits: 434.7 E(32554): 5.5e-122 Smith-Waterman score: 2325; 98.0% identity (98.0% similar) in 354 aa overlap (1-347:1-354) 10 20 30 40 50 60 pF1KE2 MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 FEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRI 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 ANSNNMNKSESDQEDNDDINDNDWSYGSEKKAKKRKSDK-------NPNSPRRSKSLKHK ::::::::::::::::::::::::::::::::::::::: :::::::::::::: CCDS45 ANSNNMNKSESDQEDNDDINDNDWSYGSEKKAKKRKSDKLWYLPFQNPNSPRRSKSLKHK 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE2 NGELSNSDPFKYNNSTGISYETLGPEELRSLLTTQCGVISEHTKKMCTRSLRCPQHTDEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 NGELSNSDPFKYNNSTGISYETLGPEELRSLLTTQCGVISEHTKKMCTRSLRCPQHTDEQ 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE2 RRTVRIYFLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDLSPSDSGSSKTSEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 RRTVRIYFLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDLSPSDSGSSKTSEN 250 260 270 280 290 300 300 310 320 330 340 pF1KE2 QGWGLGTNSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIYDDIN :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 QGWGLGTNSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIYDDIN 310 320 330 340 350 >>CCDS53815.1 ATXN7L3B gene_id:552889|Hs108|chr12 (97 aa) initn: 331 init1: 312 opt: 316 Z-score: 327.5 bits: 67.2 E(32554): 6.4e-12 Smith-Waterman score: 316; 70.6% identity (88.2% similar) in 68 aa overlap (3-70:1-66) 10 20 30 40 50 60 pF1KE2 MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKD :::.::..::..::::::::::.::.::::::::::::::::::::.:. .. :.:: CCDS53 MEEISLANLDTNKLEAIAQEIYVDLIEDSCLGFCFEVHRAVKCGYFYLEFAETGSVKD 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 FEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRI : : :: : CCDS53 FGI--QPVEDKGACRLPLCSLPGEPGNGPDQQLQRSPPEFQ 60 70 80 90 347 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:52:43 2016 done: Mon Nov 7 15:52:44 2016 Total Scan time: 3.020 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]