FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6588, 177 aa 1>>>pF1KE6588 177 - 177 aa - 177 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7603+/-0.000398; mu= 13.8068+/- 0.025 mean_var=193.8604+/-37.224, 0's: 0 Z-trim(119.9): 127 B-trim: 183 in 1/52 Lambda= 0.092115 statistics sampled from 34364 (34511) to 34364 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.405), width: 16 Scan time: 3.130 The best scores are: opt bits E(85289) NP_112229 (OMIM: 608819) keratin-associated protei ( 177) 1472 206.9 1.4e-53 NP_112228 (OMIM: 608820) keratin-associated protei ( 167) 1191 169.5 2.4e-42 NP_114163 (OMIM: 608822) keratin-associated protei ( 174) 1132 161.7 5.5e-40 NP_001244234 (OMIM: 608821) keratin-associated pro ( 121) 883 128.4 4.2e-30 NP_005544 (OMIM: 148021) keratin-associated protei ( 169) 380 61.7 6.6e-10 NP_001005922 (OMIM: 148022) keratin-associated pro ( 278) 353 58.5 1e-08 NP_787054 (OMIM: 600064) keratin-associated protei ( 163) 218 40.2 0.002 NP_853630 (OMIM: 608718) keratin-associated protei ( 172) 201 38.0 0.0097 >>NP_112229 (OMIM: 608819) keratin-associated protein 1- (177 aa) initn: 1472 init1: 1472 opt: 1472 Z-score: 1082.9 bits: 206.9 E(85289): 1.4e-53 Smith-Waterman score: 1472; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177) 10 20 30 40 50 60 pF1KE6 MACCQTSFCGFPSCSTSGTCGSSCCQPSCCETSSCQPRCCETSCCQPSCCQTSFCGFPSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 MACCQTSFCGFPSCSTSGTCGSSCCQPSCCETSSCQPRCCETSCCQPSCCQTSFCGFPSF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 STGGTCDSSCCQPSCCETSCCQPSCYQTSSCGTGCGIGGGIGYGQEGSSGAVSTRIRWCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 STGGTCDSSCCQPSCCETSCCQPSCYQTSSCGTGCGIGGGIGYGQEGSSGAVSTRIRWCR 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 PDCRVEGTCLPPCCVVSCTPPSCCQLHHAEASCCRPSYCGQSCCRPVCCCYCSEPTC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 PDCRVEGTCLPPCCVVSCTPPSCCQLHHAEASCCRPSYCGQSCCRPVCCCYCSEPTC 130 140 150 160 170 >>NP_112228 (OMIM: 608820) keratin-associated protein 1- (167 aa) initn: 1170 init1: 1170 opt: 1191 Z-score: 881.4 bits: 169.5 E(85289): 2.4e-42 Smith-Waterman score: 1299; 89.8% identity (92.7% similar) in 177 aa overlap (1-177:1-167) 10 20 30 40 50 60 pF1KE6 MACCQTSFCGFPSCSTSGTCGSSCCQPSCCETSSCQPRCCETSCCQPSCCQTSFCGFPSF :.::::::::.:::::::::::::::::::::: ::::::::::::::::: NP_112 MTCCQTSFCGYPSCSTSGTCGSSCCQPSCCETS----------CCQPSCCQTSFCGFPSF 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 STGGTCDSSCCQPSCCETSCCQPSCYQTSSCGTGCGIGGGIGYGQEGSSGAVSTRIRWCR ::.:::.:::::::::::::::::: :::::::::::::::::::::::::::::::::: NP_112 STSGTCSSSCCQPSCCETSCCQPSCCQTSSCGTGCGIGGGIGYGQEGSSGAVSTRIRWCR 60 70 80 90 100 110 130 140 150 160 170 pF1KE6 PDCRVEGTCLPPCCVVSCTPPSCCQLHHAEASCCRPSYCGQSCCRPVCCCYCSEPTC :::::::::::::::::::::.::::::::::::::::::::::::::::: :::: NP_112 PDCRVEGTCLPPCCVVSCTPPTCCQLHHAEASCCRPSYCGQSCCRPVCCCYSCEPTC 120 130 140 150 160 >>NP_114163 (OMIM: 608822) keratin-associated protein 1- (174 aa) initn: 1105 init1: 1105 opt: 1132 Z-score: 838.8 bits: 161.7 E(85289): 5.5e-40 Smith-Waterman score: 1162; 80.2% identity (84.0% similar) in 187 aa overlap (1-177:1-174) 10 20 30 40 50 60 pF1KE6 MACCQTSFCGFPSCSTSGTCGSSCCQPSCCETSSCQPRCCETSCCQPSCCQTSFCGFPSF :.::::::::.:: : ::::::::::::::::: :::: ::::::::::: NP_114 MTCCQTSFCGYPSFSISGTCGSSCCQPSCCETS----------CCQPRSCQTSFCGFPSF 10 20 30 40 50 70 80 90 100 110 pF1KE6 STGGTCDSSCCQPSCCETSCCQPSCYQTS----------SCGTGCGIGGGIGYGQEGSSG ::.:::.:::::::::::::::::: .:: ::::::::::::.:::::::: NP_114 STSGTCSSSCCQPSCCETSCCQPSCCETSCCQPSCCQISSCGTGCGIGGGISYGQEGSSG 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 AVSTRIRWCRPDCRVEGTCLPPCCVVSCTPPSCCQLHHAEASCCRPSYCGQSCCRPVCCC :::::::::::: ::::: ::::::::::::::::::::.:::::::::::::::::::: NP_114 AVSTRIRWCRPDSRVEGTYLPPCCVVSCTPPSCCQLHHAQASCCRPSYCGQSCCRPVCCC 120 130 140 150 160 170 pF1KE6 YCSEPTC :::: NP_114 ---EPTC >>NP_001244234 (OMIM: 608821) keratin-associated protein (121 aa) initn: 883 init1: 883 opt: 883 Z-score: 661.5 bits: 128.4 E(85289): 4.2e-30 Smith-Waterman score: 883; 89.1% identity (95.8% similar) in 119 aa overlap (59-177:3-121) 30 40 50 60 70 80 pF1KE6 CCETSSCQPRCCETSCCQPSCCQTSFCGFPSFSTGGTCDSSCCQPSCCETSCCQPSCYQT : ::.::: :::::::::::::::::: :: NP_001 MASCSTSGTCGSSCCQPSCCETSCCQPSCCQT 10 20 30 90 100 110 120 130 140 pF1KE6 SSCGTGCGIGGGIGYGQEGSSGAVSTRIRWCRPDCRVEGTCLPPCCVVSCTPPSCCQLHH ::::::::::::::::::::.:.::::::::.:::.::::::::: .::::::::::::: NP_001 SSCGTGCGIGGGIGYGQEGSGGSVSTRIRWCHPDCHVEGTCLPPCYLVSCTPPSCCQLHH 40 50 60 70 80 90 150 160 170 pF1KE6 AEASCCRPSYCGQSCCRPVCCCYCSEPTC ::::::::::::::::::.:::.: :::: NP_001 AEASCCRPSYCGQSCCRPACCCHCCEPTC 100 110 120 >>NP_005544 (OMIM: 148021) keratin-associated protein 5- (169 aa) initn: 305 init1: 206 opt: 380 Z-score: 298.8 bits: 61.7 E(85289): 6.6e-10 Smith-Waterman score: 438; 38.7% identity (51.3% similar) in 191 aa overlap (1-177:1-159) 10 20 30 40 50 pF1KE6 MACCQTSF-CGFPSC----STSGTCGSSC--CQPSCCE-TSSCQPRCCETSCCQPSCCQT :.:: : :: :: :. :.:::.: : :::: . :.: :: . :. : : NP_005 MGCCGCSGGCG-SSCGGCDSSCGSCGSGCRGCGPSCCAPVYCCKPVCCCVPACSCSSCGK 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 SFCGFPSFSTGGTCDSSCCQPSCCETSCCQPSCYQTSSCGTGCGIGGGIGYGQEGSSGAV :: . : :: : .:: .: . :::.: : :..::: .: NP_005 RGCGSCGGSKGG-C-GSC---GCSQCSCCKPCC-----CSSGCG----------SSCCQC 60 70 80 90 120 130 140 150 160 pF1KE6 STRIRWCRPDCRVEGTCLPPCCVVSCTPPSCCQLHHAEASCCRP----SYCGQSCCRPVC : :.: : . .: ::: : :::: .:::.: : ::.:::. : NP_005 SC----CKPYCS-QCSCCKPCCSSSGRGSSCCQ-----SSCCKPCCSSSGCGSSCCQSSC 100 110 120 130 140 170 pF1KE6 C--CYCSEPTC : : ::. : NP_005 CKPC-CSQSRCCVPVCYQCKI 150 160 >>NP_001005922 (OMIM: 148022) keratin-associated protein (278 aa) initn: 303 init1: 182 opt: 353 Z-score: 277.4 bits: 58.5 E(85289): 1e-08 Smith-Waterman score: 353; 35.3% identity (48.9% similar) in 190 aa overlap (1-177:1-177) 10 20 30 40 50 pF1KE6 MACCQTSF-CGFPSC----STSGTCGSSC--CQPSCCET-SSCQPRCCETSCCQPSCCQT :.:: : :: :: : : :::.: : .: . ::: : . ::.: ::.. NP_001 MGCCGCSGGCG-SSCGGCGSGCGGCGSGCGGCGSGCGGSGSSC---CVPVCCCKPVCCRV 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 SFCGFPSFSTGGTCDSSCCQPSCCETSC--CQPSCYQTSSCGTGCGIGGGIGYGQEGSSG :. : . :: : :: . . : :: :. .: .::: . : :. : :..:. : NP_001 PTCSCSSCGKGG-CGSSGGSKGGC-GSCGGCKGGC---GSCGGSKGGCGSCG-GSKGGCG 60 70 80 90 100 110 120 130 140 150 160 pF1KE6 AVSTRIRWCRPDCRVEGTCLPPCCV-VSCTPPSCCQLHHAEASCCRPSYCGQSCCRPVCC . . : : : : ::: : : : :: . : : . ::. : : NP_001 SCGGSKGGCGSGC---GGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGAC 120 130 140 150 160 170 pF1KE6 CYC--SEPTC : :. : NP_001 GSCGGSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSK 170 180 190 200 210 220 >-- initn: 422 init1: 182 opt: 257 Z-score: 208.4 bits: 45.7 E(85289): 7.2e-05 Smith-Waterman score: 257; 40.0% identity (53.3% similar) in 90 aa overlap (9-87:197-275) 10 20 30 pF1KE6 MACCQTSFCGFPSCSTSGTCGSSCCQPSCCETSS---- :: .: : :::.: : :: . : NP_001 CGSCGGSKGGCGSCGGCKGGCGSCGGSKGGCG-SGC---GGCGSGCGVPVCCCSCSSCGS 170 180 190 200 210 220 40 50 60 70 80 pF1KE6 -------CQPRCCETSCCQPSCCQTSFCGFPSFSTGGTCDSSCCQPSCCETSCCQPSCYQ : : . :::.: :: .: :: .. :.::::.: : ..::: : : : NP_001 CAGSKGGCGSSCSQCSCCKPCCC-SSGCG------SSCCQSSCCKPCCSQSSCCVPVCCQ 230 240 250 260 270 90 100 110 120 130 140 pF1KE6 TSSCGTGCGIGGGIGYGQEGSSGAVSTRIRWCRPDCRVEGTCLPPCCVVSCTPPSCCQLH NP_001 CKI >>NP_787054 (OMIM: 600064) keratin-associated protein 11 (163 aa) initn: 253 init1: 129 opt: 218 Z-score: 182.6 bits: 40.2 E(85289): 0.002 Smith-Waterman score: 228; 31.4% identity (51.1% similar) in 137 aa overlap (2-138:34-159) 10 20 30 pF1KE6 MACCQTSFCGFPSCSTSGTCGSSCCQPSCCE : : ..: .:: .:. . :: .::: NP_787 NCSTRNCSSRPIGGRCIVPVAQVTTTSTTDADCLGGIC-LPSSFQTGSWLLDHCQETCCE 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 TSSCQPRCCETSCCQPSCCQTSFCGFPSFSTGGTCDSSCCQPSCCETSCCQPSCYQTSSC ..::: : . . : . ::.. :. . .. :... .: .: ::: .: : NP_787 PTACQPTCYRRTSCVSNPCQVT-CSRQTTCISNPCSTTYSRPLTFVSSGCQPLGGISSVC 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE6 GTGCGIGGGIGYGQEGSSGAVSTRIRWCRPDCRVEGTCLPPCCVVSCTPPSCCQLHHAEA .:: : :.::: :.: : : : :: :: NP_787 QP---VGGISTVCQ--PVGGVSTV---CQPACGVSRT-YQQSCVSSCRRTC 130 140 150 160 160 170 pF1KE6 SCCRPSYCGQSCCRPVCCCYCSEPTC >>NP_853630 (OMIM: 608718) keratin-associated protein 13 (172 aa) initn: 219 init1: 128 opt: 201 Z-score: 170.2 bits: 38.0 E(85289): 0.0097 Smith-Waterman score: 224; 29.1% identity (52.3% similar) in 151 aa overlap (7-138:24-166) 10 20 30 40 pF1KE6 MACCQTSFCGFPSCSTSGTCGSSCCQPSCCETSSCQPRCCETS : ::: : .. . ... :.:: :. .: : :. . NP_853 MSYNCCSGNFSSRSCGGYLHYPASSCGF-SYPSNQVYSTDLCSPSTCQLGSSLYRGCQQT 10 20 30 40 50 50 60 70 80 pF1KE6 CCQPSCCQTSFCGFPSFSTGGTCDSSCCQPS----C--CET----------SCCQPSCYQ : .:. ::::. .. :..:: .: : :.: : :. : NP_853 CWEPTSCQTSYV------ESSPCQTSCYRPRTSLLCSPCQTTYSGSLGFGSSSCRSLGYG 60 70 80 90 100 110 90 100 110 120 130 140 pF1KE6 TSSC-GTGCGIGG--GIGYGQEGSSGAVSTRIRWCRPDCRVEGTCLPPCCVVSCTPPSCC . :: ..::: .: ..::: : ... . .::: . .: : .: NP_853 SRSCYSVGCGSSGFRSLGYGGCGFP-SLGYGVGFCRPTYLASRSCQSSCYRPTCGSGFYY 120 130 140 150 160 170 150 160 170 pF1KE6 QLHHAEASCCRPSYCGQSCCRPVCCCYCSEPTC 177 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:37:10 2016 done: Tue Nov 8 14:37:11 2016 Total Scan time: 3.130 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]