FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4022, 210 aa 1>>>pF1KE4022 210 - 210 aa - 210 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5390+/-0.000803; mu= 11.7714+/- 0.048 mean_var=60.6159+/-12.052, 0's: 0 Z-trim(106.3): 40 B-trim: 0 in 0/52 Lambda= 0.164733 statistics sampled from 8887 (8924) to 8887 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.274), width: 16 Scan time: 2.040 The best scores are: opt bits E(32554) CCDS42273.1 TBC1D28 gene_id:254272|Hs108|chr17 ( 210) 1403 341.7 1.9e-94 CCDS42265.1 TBC1D26 gene_id:353149|Hs108|chr17 ( 250) 1148 281.1 4e-76 CCDS11069.2 USP6 gene_id:9098|Hs108|chr17 (1406) 582 146.8 6e-35 CCDS42300.1 TBC1D3B gene_id:414059|Hs108|chr17 ( 549) 553 139.8 3e-33 CCDS74040.1 TBC1D3G gene_id:101060321|Hs108|chr17 ( 549) 553 139.8 3e-33 CCDS45653.1 TBC1D3H gene_id:729877|Hs108|chr17 ( 549) 547 138.4 8.1e-33 CCDS74042.1 TBC1D3K gene_id:101060351|Hs108|chr17 ( 549) 545 137.9 1.1e-32 CCDS74039.1 TBC1D3I gene_id:102724862|Hs108|chr17 ( 549) 544 137.7 1.3e-32 CCDS74045.1 TBC1D3C gene_id:414060|Hs108|chr17 ( 549) 543 137.5 1.6e-32 CCDS45658.1 TBC1D3 gene_id:729873|Hs108|chr17 ( 549) 543 137.5 1.6e-32 CCDS74044.1 LOC101060389 gene_id:101060389|Hs108|c ( 549) 543 137.5 1.6e-32 CCDS74043.1 TBC1D3L gene_id:101060376|Hs108|chr17 ( 549) 543 137.5 1.6e-32 CCDS77009.1 TBC1D3E gene_id:102723859|Hs108|chr17 ( 549) 533 135.1 8.1e-32 CCDS53492.1 USP6NL gene_id:9712|Hs108|chr10 ( 828) 408 105.4 1e-22 CCDS44357.1 USP6NL gene_id:9712|Hs108|chr10 ( 845) 405 104.7 1.7e-22 >>CCDS42273.1 TBC1D28 gene_id:254272|Hs108|chr17 (210 aa) initn: 1403 init1: 1403 opt: 1403 Z-score: 1809.0 bits: 341.7 E(32554): 1.9e-94 Smith-Waterman score: 1403; 99.5% identity (99.5% similar) in 210 aa overlap (1-210:1-210) 10 20 30 40 50 60 pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV ::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: CCDS42 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPRV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY 130 140 150 160 170 180 190 200 210 pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS :::::::::::::::::::::::::::::: CCDS42 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS 190 200 210 >>CCDS42265.1 TBC1D26 gene_id:353149|Hs108|chr17 (250 aa) initn: 1148 init1: 1148 opt: 1148 Z-score: 1480.2 bits: 281.1 E(32554): 4e-76 Smith-Waterman score: 1148; 96.2% identity (97.3% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV :::: :: ::::::::::::::::::::::::::::::::::::::::::::::: ::.: CCDS42 MEMDGDPYNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPHV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI :::::::::::::::::::::::::::::::::::::: ::::::::::: :::::::.: CCDS42 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY 130 140 150 160 170 180 190 200 210 pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS :: CCDS42 NPEVGYHRDLSRITAILLLCLPEEDAFWALTQLLAGERHSLWYSTAQILPGSRGSYRTRS 190 200 210 220 230 240 >>CCDS11069.2 USP6 gene_id:9098|Hs108|chr17 (1406 aa) initn: 549 init1: 549 opt: 582 Z-score: 740.9 bits: 146.8 E(32554): 6e-35 Smith-Waterman score: 582; 49.5% identity (76.9% similar) in 182 aa overlap (1-182:1-181) 10 20 30 40 50 60 pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV :.: :. :.: :: . .:.. ::..::::: : : : : . . . .::.:: :: : CCDS11 MDMVENADSLQAQERKDILM-KYDKGHRAGLPEDKGPEPVGINSSIDRFGILHETELPPV 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI .: :.:. :.: ::.::..::..: :. ..:: .:: : ::. .:: . :.::.:..: CCDS11 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY : .:::.:..:::.:::::. :: :.::: ::..:..: .:.:.::.:: ::.::: : CCDS11 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAKQRELFYILLAYSEY 120 130 140 150 160 170 190 200 210 pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS :: CCDS11 NPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSLPGFHSPNGGTVQGLQDQQE 180 190 200 210 220 230 >>CCDS42300.1 TBC1D3B gene_id:414059|Hs108|chr17 (549 aa) initn: 538 init1: 483 opt: 553 Z-score: 710.4 bits: 139.8 E(32554): 3e-33 Smith-Waterman score: 553; 49.7% identity (74.1% similar) in 185 aa overlap (1-182:1-182) 10 20 30 40 50 pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL :.. : . :: . .::. :::.::::: : : . :.:.:: :::::: : CCDS42 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI : ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::.: CCDS42 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNI 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY ...: .:::.:..:::::::::. :. :. :.: ::.:::.: .:.:.::.:: ::.:: CCDS42 EEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAY 120 130 140 150 160 170 180 190 200 210 pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS ::: CCDS42 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD 180 190 200 210 220 230 >>CCDS74040.1 TBC1D3G gene_id:101060321|Hs108|chr17 (549 aa) initn: 538 init1: 483 opt: 553 Z-score: 710.4 bits: 139.8 E(32554): 3e-33 Smith-Waterman score: 553; 49.7% identity (74.1% similar) in 185 aa overlap (1-182:1-182) 10 20 30 40 50 pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL :.. : . :: . .::. :::.::::: : : . :.:.:: :::::: : CCDS74 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI : ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::.: CCDS74 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNI 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY ...: .:::.:..:::::::::. :. :. :.: ::.:::.: .:.:.::.:: ::.:: CCDS74 EEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAY 120 130 140 150 160 170 180 190 200 210 pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS ::: CCDS74 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD 180 190 200 210 220 230 >>CCDS45653.1 TBC1D3H gene_id:729877|Hs108|chr17 (549 aa) initn: 532 init1: 477 opt: 547 Z-score: 702.7 bits: 138.4 E(32554): 8.1e-33 Smith-Waterman score: 547; 49.2% identity (73.5% similar) in 185 aa overlap (1-182:1-182) 10 20 30 40 50 pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL :.. : . :: . .::. :::.::::: : : . :.:.:: :::::: : CCDS45 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI : ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::. CCDS45 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNT 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY ...: .:::.:..:::::::::. :. :. :.: ::.:::.: .:.:.::.:: ::.:: CCDS45 EEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAY 120 130 140 150 160 170 180 190 200 210 pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS ::: CCDS45 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD 180 190 200 210 220 230 >>CCDS74042.1 TBC1D3K gene_id:101060351|Hs108|chr17 (549 aa) initn: 530 init1: 475 opt: 545 Z-score: 700.1 bits: 137.9 E(32554): 1.1e-32 Smith-Waterman score: 545; 49.2% identity (74.1% similar) in 185 aa overlap (1-182:1-182) 10 20 30 40 50 pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL :.. : . :: . .::. :::.::::: : : . :.:.:: :::::: : CCDS74 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI : ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::.: CCDS74 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNI 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY ...: .:::.:..::::::.::. :. :. ::: ::.::..: .:.:.::.:: ::.:: CCDS74 EEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAY 120 130 140 150 160 170 180 190 200 210 pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS ::: CCDS74 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD 180 190 200 210 220 230 >>CCDS74039.1 TBC1D3I gene_id:102724862|Hs108|chr17 (549 aa) initn: 529 init1: 474 opt: 544 Z-score: 698.8 bits: 137.7 E(32554): 1.3e-32 Smith-Waterman score: 544; 49.2% identity (73.5% similar) in 185 aa overlap (1-182:1-182) 10 20 30 40 50 pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL :.. : . :: . .::. :::.::::: : : . :.:.:: :::::: : CCDS74 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI : ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::. CCDS74 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNT 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY ...: .:::.:..:::::::::. :. :. ::: ::.::..: .:.:.::.:: ::.:: CCDS74 EEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAY 120 130 140 150 160 170 180 190 200 210 pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS ::: CCDS74 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD 180 190 200 210 220 230 >>CCDS74045.1 TBC1D3C gene_id:414060|Hs108|chr17 (549 aa) initn: 528 init1: 473 opt: 543 Z-score: 697.5 bits: 137.5 E(32554): 1.6e-32 Smith-Waterman score: 543; 49.2% identity (73.5% similar) in 185 aa overlap (1-182:1-182) 10 20 30 40 50 pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL :.. : . :: . .::. :::.::::: : : . :.:.:: :::::: : CCDS74 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI : ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::. CCDS74 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNT 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY ...: .:::.:..:::::::::. :. :. ::: ::.::..: .:.:.::.:: ::.:: CCDS74 EEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAY 120 130 140 150 160 170 180 190 200 210 pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS ::: CCDS74 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD 180 190 200 210 220 230 >>CCDS45658.1 TBC1D3 gene_id:729873|Hs108|chr17 (549 aa) initn: 528 init1: 473 opt: 543 Z-score: 697.5 bits: 137.5 E(32554): 1.6e-32 Smith-Waterman score: 543; 49.2% identity (73.5% similar) in 185 aa overlap (1-182:1-182) 10 20 30 40 50 pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMAL :.. : . :: . .::. :::.::::: : : . :.:.:: :::::: : CCDS45 MDVVEVAGSWWAQEREDIIM-KYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETEL 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 PRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDI : ..: :.:: :.: .: .:: ::.:: ::.:..:: .:. : .:. .:: :.::. CCDS45 PPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNT 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 DKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAY ...: .:::.:..:::::::::. :. :. ::: ::.::..: .:.:.::.:: ::.:: CCDS45 EEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAY 120 130 140 150 160 170 180 190 200 210 pF1KE4 SAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS ::: CCDS45 EEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQD 180 190 200 210 220 230 210 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:07:04 2016 done: Sun Nov 6 03:07:04 2016 Total Scan time: 2.040 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]