FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1140, 403 aa 1>>>pF1KE1140 403 - 403 aa - 403 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.6387+/-0.000305; mu= -5.2721+/- 0.019 mean_var=325.7723+/-66.156, 0's: 0 Z-trim(126.8): 5 B-trim: 0 in 0/62 Lambda= 0.071059 statistics sampled from 53516 (53521) to 53516 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.86), E-opt: 0.2 (0.628), width: 16 Scan time: 11.940 The best scores are: opt bits E(85289) NP_077273 (OMIM: 612910) PHD finger protein 23 iso ( 403) 2794 299.2 1.2e-80 NP_001271447 (OMIM: 612910) PHD finger protein 23 ( 399) 2722 291.9 1.9e-78 NP_001271446 (OMIM: 612910) PHD finger protein 23 ( 336) 1972 214.9 2.3e-55 >>NP_077273 (OMIM: 612910) PHD finger protein 23 isoform (403 aa) initn: 2794 init1: 2794 opt: 2794 Z-score: 1569.2 bits: 299.2 E(85289): 1.2e-80 Smith-Waterman score: 2794; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403) 10 20 30 40 50 60 pF1KE1 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG 310 320 330 340 350 360 370 380 390 400 pF1KE1 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP ::::::::::::::::::::::::::::::::::::::::::: NP_077 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP 370 380 390 400 >>NP_001271447 (OMIM: 612910) PHD finger protein 23 isof (399 aa) initn: 2722 init1: 2722 opt: 2722 Z-score: 1529.4 bits: 291.9 E(85289): 1.9e-78 Smith-Waterman score: 2722; 100.0% identity (100.0% similar) in 392 aa overlap (12-403:8-399) 10 20 30 40 50 60 pF1KE1 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS ::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPGDCRRDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE1 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG 300 310 320 330 340 350 370 380 390 400 pF1KE1 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP ::::::::::::::::::::::::::::::::::::::::::: NP_001 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP 360 370 380 390 >>NP_001271446 (OMIM: 612910) PHD finger protein 23 isof (336 aa) initn: 1972 init1: 1972 opt: 1972 Z-score: 1114.8 bits: 214.9 E(85289): 2.3e-55 Smith-Waterman score: 2198; 83.4% identity (83.4% similar) in 403 aa overlap (1-403:1-336) 10 20 30 40 50 60 pF1KE1 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKE------- 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ NP_001 ------------------------------------------------------------ 130 140 150 160 170 180 pF1KE1 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK 60 70 80 90 100 110 190 200 210 220 230 240 pF1KE1 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA 120 130 140 150 160 170 250 260 270 280 290 300 pF1KE1 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES 180 190 200 210 220 230 310 320 330 340 350 360 pF1KE1 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG 240 250 260 270 280 290 370 380 390 400 pF1KE1 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP ::::::::::::::::::::::::::::::::::::::::::: NP_001 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP 300 310 320 330 403 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 11:04:14 2016 done: Sun Nov 6 11:04:16 2016 Total Scan time: 11.940 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]