FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1140, 403 aa
  1>>>pF1KE1140 403 - 403 aa - 403 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8656+/-0.000764; mu= -0.5527+/- 0.046
 mean_var=289.2009+/-58.786, 0's: 0 Z-trim(118.9): 10  B-trim: 213 in 1/55
 Lambda= 0.075418
 statistics sampled from 19927 (19937) to 19927 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.859), E-opt: 0.2 (0.612), width:  16
 Scan time:  4.020

The best scores are:                                      opt bits E(32554)
CCDS42250.1 PHF23 gene_id:79142|Hs108|chr17        ( 403) 2794 316.5 2.9e-86
CCDS67143.1 PHF23 gene_id:79142|Hs108|chr17        ( 399) 2722 308.6 6.5e-84
CCDS67144.1 PHF23 gene_id:79142|Hs108|chr17        ( 336) 1972 227.0 2.1e-59


>>CCDS42250.1 PHF23 gene_id:79142|Hs108|chr17             (403 aa)
 initn: 2794 init1: 2794 opt: 2794  Z-score: 1662.3  bits: 316.5 E(32554): 2.9e-86
Smith-Waterman score: 2794; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)

               10        20        30        40        50        60
pF1KE1 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG
              310       320       330       340       350       360

              370       380       390       400   
pF1KE1 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
       :::::::::::::::::::::::::::::::::::::::::::
CCDS42 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
              370       380       390       400   

>>CCDS67143.1 PHF23 gene_id:79142|Hs108|chr17             (399 aa)
 initn: 2722 init1: 2722 opt: 2722  Z-score: 1620.0  bits: 308.6 E(32554): 6.5e-84
Smith-Waterman score: 2722; 100.0% identity (100.0% similar) in 392 aa overlap (12-403:8-399)

               10        20        30        40        50        60
pF1KE1 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS
                  :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67     MPGDCRRDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KE1 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KE1 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK
        120       130       140       150       160       170      

              190       200       210       220       230       240
pF1KE1 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA
        180       190       200       210       220       230      

              250       260       270       280       290       300
pF1KE1 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES
        240       250       260       270       280       290      

              310       320       330       340       350       360
pF1KE1 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG
        300       310       320       330       340       350      

              370       380       390       400   
pF1KE1 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
       :::::::::::::::::::::::::::::::::::::::::::
CCDS67 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
        360       370       380       390         

>>CCDS67144.1 PHF23 gene_id:79142|Hs108|chr17             (336 aa)
 initn: 1972 init1: 1972 opt: 1972  Z-score: 1180.0  bits: 227.0 E(32554): 2.1e-59
Smith-Waterman score: 2198; 83.4% identity (83.4% similar) in 403 aa overlap (1-403:1-336)

               10        20        30        40        50        60
pF1KE1 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS67 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKE-------
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE1 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ
                                                                   
CCDS67 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KE1 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK
            60        70        80        90       100       110   

              190       200       210       220       230       240
pF1KE1 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA
           120       130       140       150       160       170   

              250       260       270       280       290       300
pF1KE1 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES
           180       190       200       210       220       230   

              310       320       330       340       350       360
pF1KE1 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG
           240       250       260       270       280       290   

              370       380       390       400   
pF1KE1 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
       :::::::::::::::::::::::::::::::::::::::::::
CCDS67 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
           300       310       320       330      




403 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:04:13 2016 done: Sun Nov  6 11:04:14 2016
 Total Scan time:  4.020 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]