FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4143, 569 aa 1>>>pF1KE4143 569 - 569 aa - 569 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.4567+/-0.00103; mu= -4.0131+/- 0.061 mean_var=288.4469+/-60.488, 0's: 0 Z-trim(113.4): 51 B-trim: 117 in 1/51 Lambda= 0.075516 statistics sampled from 13963 (13997) to 13963 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.43), width: 16 Scan time: 4.240 The best scores are: opt bits E(32554) CCDS42140.1 RABEP2 gene_id:79874|Hs108|chr16 ( 569) 3596 405.3 1e-112 CCDS42243.1 RABEP1 gene_id:9135|Hs108|chr17 ( 829) 593 78.3 4.2e-14 >>CCDS42140.1 RABEP2 gene_id:79874|Hs108|chr16 (569 aa) initn: 3596 init1: 3596 opt: 3596 Z-score: 2137.2 bits: 405.3 E(32554): 1e-112 Smith-Waterman score: 3596; 99.8% identity (100.0% similar) in 569 aa overlap (1-569:1-569) 10 20 30 40 50 60 pF1KE4 MAAAAPVAADDDERRRRPGSALEDSRSQEGANGEAESGELSRLRAELAGALAEMETMKAV :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: CCDS42 MAAAAPVAADDDERRRRPGAALEDSRSQEGANGEAESGELSRLRAELAGALAEMETMKAV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 AEVSESTKAEAVAAVQRQCQEEVASLQAILKDSISSYEAQITALKQERQQQQQDCEEKER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 AEVSESTKAEAVAAVQRQCQEEVASLQAILKDSISSYEAQITALKQERQQQQQDCEEKER 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ELGRLKQLLSRAYPLDSLEKQMEKAHEDSEKLREIVLPMEKEIEELKAKLLRAEELIQEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 ELGRLKQLLSRAYPLDSLEKQMEKAHEDSEKLREIVLPMEKEIEELKAKLLRAEELIQEI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 QRRPRHAPSLHGSTELLPLSRDPSPPLEPLEELSGDGGPAAEAFAHNCDDSASISSFSLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 QRRPRHAPSLHGSTELLPLSRDPSPPLEPLEELSGDGGPAAEAFAHNCDDSASISSFSLG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 GGVGSSSSLPQSRQGLSPEQEETASLVSTGTLVPEGIYLPPPGYQLVPDTQWEQLQTEGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 GGVGSSSSLPQSRQGLSPEQEETASLVSTGTLVPEGIYLPPPGYQLVPDTQWEQLQTEGR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 QLQKDLESVSRERDELQEGLRRSNEDCAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 QLQKDLESVSRERDELQEGLRRSNEDCAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQ 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 LQMAELVTTHKCLHHEVKRLNEENQGLRAEQLPSSAPQGSQQEQGEEESLPSSVPELQQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 LQMAELVTTHKCLHHEVKRLNEENQGLRAEQLPSSAPQGSQQEQGEEESLPSSVPELQQL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 LCCTRQEARARLQAQEHGAERLRIEIVTLREALEEETVARASLEGQLRVQREETEVLEAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 LCCTRQEARARLQAQEHGAERLRIEIVTLREALEEETVARASLEGQLRVQREETEVLEAS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 LCSLRTEMERVQQEQSKAQLPDLLSEQRAKVLRLQAELETSEQVQRDFVRLSQALQVRLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 LCSLRTEMERVQQEQSKAQLPDLLSEQRAKVLRLQAELETSEQVQRDFVRLSQALQVRLE 490 500 510 520 530 540 550 560 pF1KE4 RIRQAETLEQVRSIMDEAPLTDVRDIKDT ::::::::::::::::::::::::::::: CCDS42 RIRQAETLEQVRSIMDEAPLTDVRDIKDT 550 560 >>CCDS42243.1 RABEP1 gene_id:9135|Hs108|chr17 (829 aa) initn: 782 init1: 359 opt: 593 Z-score: 366.7 bits: 78.3 E(32554): 4.2e-14 Smith-Waterman score: 686; 30.2% identity (62.0% similar) in 553 aa overlap (76-569:291-829) 50 60 70 80 90 100 pF1KE4 ELAGALAEMETMKAVAEVSESTKAEAVAAVQRQCQEEVASLQAILKDSISSYEAQITALK :: .... .. .: : :. :: CCDS42 EVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMEIVL---TSEQLRQVEELK 270 280 290 300 310 110 120 130 140 150 160 pF1KE4 ---QERQQQQQDCEEKERELGRLKQLLSRAYPLDSLEKQMEKAHEDSEKLREIVLPMEKE :: ..::. ..:... . ... .. :. : :.. . :.. .: . . CCDS42 KKDQEDDEQQRLNKRKDHKKADVEEEIK--IPVVCALTQEESSAQLSNE-EEHLDSTRGS 320 330 340 350 360 370 170 180 190 200 210 pF1KE4 IEELKAKLL---------RAEELIQEIQRRPRHAPSL--HGSTELLPLSRD-PSPPLEPL .. : : :: ...... :: . . :: :: . :. . . : CCDS42 VHSLDAGLLLPSGDPFSKSDNDMFKDGLRRAQSTDSLGTSGSLQSKALGYNYKAKSAGNL 380 390 400 410 420 430 220 230 240 250 260 pF1KE4 EELSGDGGP--AAEAFAHNCDDSASISSFSLGGGVGSSSSLPQSRQGLSPEQEETASLVS .: .: :: .:.. ..: : .::..:... .: ... .. ....:::::::::.: CCDS42 DE--SDFGPLVGADSVSENFD-TASLGSLQMPSGFMLTKDQERAIKAMTPEQEETASLLS 440 450 460 470 480 490 270 280 290 300 pF1KE4 TGTLVPEGIYLPPPGYQLVPDTQWEQLQTE--------GR----------QLQ------- . : :. :. : ::.:: .:.:. :: : :: ::: CCDS42 SVTQGMESAYVSPSGYRLVSETEWNLLQKEVHNAGNKLGRRCDMCSNYEKQLQGIQIQEA 500 510 520 530 540 550 310 320 330 340 pF1KE4 --KD---------------LESVSRERDELQEGLRRSNEDCAKQMQVLLAQVQNSEQLLR .: ::.. ....::.. ...:.:: ..:...:. ..: :: ::. CCDS42 ETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLE 560 570 580 590 600 610 350 360 370 380 390 400 pF1KE4 TLQGTVSQAQERVQLQMAELVTTHKCLHHEVKRLNEENQGLRAEQLPSSAPQGSQQEQGE :: .:::.. :: ::: :. ... . .:. ::...:..:.... . : :.: CCDS42 ELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHVSLQ-----QAE 620 630 640 650 660 410 420 430 440 450 460 pF1KE4 EESLPSSVPELQQLLCCTRQEARARLQAQEHGAERLRIEIVTLREALEEETVARASLEGQ . ::... :..:. :.. : .: :.:. ::. :.: .. : . .:: CCDS42 DFILPDTTEALRELVLKYREDIINVRTAADHVEEKLKAEILFLKEQIQAEQCLKENLEET 670 680 690 700 710 720 470 480 490 500 510 520 pF1KE4 LRVQREETEVLEASLCSLRTEMERVQQEQSKAQLPDLLSEQRAKVLRLQAELETSEQVQR :... :. . ::. ::..:.::.. :...: . .:. :.. :. :::.::..:::::: CCDS42 LQLEIENCKEEIASISSLKAELERIKVEKGQATVEQLMFEEKNKAQRLQTELDVSEQVQR 730 740 750 760 770 780 530 540 550 560 pF1KE4 DFVRLSQALQVRLERIRQAETLEQVRSIMDEAPLTDVRDIKDT :::.:::.:::.:::::::..::..:.:.... :::. .. .: CCDS42 DFVKLSQTLQVQLERIRQADSLERIRAILNDTKLTDINQLPET 790 800 810 820 569 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 01:49:10 2016 done: Sun Nov 6 01:49:11 2016 Total Scan time: 4.240 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]