FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5685, 561 aa 1>>>pF1KE5685 561 - 561 aa - 561 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8215+/-0.00033; mu= 12.0304+/- 0.021 mean_var=124.1563+/-25.351, 0's: 0 Z-trim(118.4): 56 B-trim: 0 in 0/54 Lambda= 0.115104 statistics sampled from 31306 (31362) to 31306 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.368), width: 16 Scan time: 9.360 The best scores are: opt bits E(85289) NP_085097 (OMIM: 607342) cytoplasmic polyadenylati ( 561) 3887 656.8 5e-188 NP_001073002 (OMIM: 607342) cytoplasmic polyadenyl ( 486) 3372 571.3 2.5e-162 NP_001275748 (OMIM: 607342) cytoplasmic polyadenyl ( 486) 3372 571.3 2.5e-162 NP_001073003 (OMIM: 607342) cytoplasmic polyadenyl ( 486) 3372 571.3 2.5e-162 NP_001073001 (OMIM: 607342) cytoplasmic polyadenyl ( 491) 3352 568.0 2.5e-161 NP_001275749 (OMIM: 607342) cytoplasmic polyadenyl ( 335) 2355 402.3 1.3e-111 XP_016871416 (OMIM: 610606) PREDICTED: cytoplasmic ( 314) 744 134.7 4.1e-31 NP_001295122 (OMIM: 610607) cytoplasmic polyadenyl ( 322) 742 134.4 5.3e-31 NP_001295121 (OMIM: 610607) cytoplasmic polyadenyl ( 339) 742 134.4 5.5e-31 XP_011537819 (OMIM: 610606) PREDICTED: cytoplasmic ( 665) 744 135.0 7.4e-31 XP_005269687 (OMIM: 610606) PREDICTED: cytoplasmic ( 684) 744 135.0 7.6e-31 NP_001171608 (OMIM: 610606) cytoplasmic polyadenyl ( 684) 744 135.0 7.6e-31 XP_011537817 (OMIM: 610606) PREDICTED: cytoplasmic ( 692) 744 135.0 7.7e-31 NP_055727 (OMIM: 610606) cytoplasmic polyadenylati ( 698) 744 135.0 7.7e-31 XP_011537816 (OMIM: 610606) PREDICTED: cytoplasmic ( 707) 744 135.0 7.8e-31 XP_006717778 (OMIM: 610606) PREDICTED: cytoplasmic ( 715) 744 135.0 7.9e-31 XP_006717777 (OMIM: 610606) PREDICTED: cytoplasmic ( 715) 744 135.0 7.9e-31 NP_001295120 (OMIM: 610607) cytoplasmic polyadenyl ( 704) 742 134.7 9.8e-31 NP_001295118 (OMIM: 610607) cytoplasmic polyadenyl ( 712) 742 134.7 9.9e-31 XP_005266051 (OMIM: 610607) PREDICTED: cytoplasmic ( 721) 742 134.7 1e-30 NP_085130 (OMIM: 610607) cytoplasmic polyadenylati ( 729) 742 134.7 1e-30 XP_016863223 (OMIM: 610605) PREDICTED: cytoplasmic ( 463) 735 133.4 1.6e-30 XP_016863222 (OMIM: 610605) PREDICTED: cytoplasmic ( 463) 735 133.4 1.6e-30 NP_872587 (OMIM: 610605) cytoplasmic polyadenylati ( 996) 735 133.6 2.9e-30 NP_001170855 (OMIM: 610605) cytoplasmic polyadenyl ( 999) 735 133.6 2.9e-30 NP_001170854 (OMIM: 610605) cytoplasmic polyadenyl (1004) 735 133.6 2.9e-30 NP_001170852 (OMIM: 610605) cytoplasmic polyadenyl (1007) 735 133.6 2.9e-30 NP_872291 (OMIM: 610605) cytoplasmic polyadenylati (1026) 735 133.6 2.9e-30 XP_011512079 (OMIM: 610605) PREDICTED: cytoplasmic (1029) 735 133.6 3e-30 NP_001170853 (OMIM: 610605) cytoplasmic polyadenyl (1034) 735 133.6 3e-30 XP_005248192 (OMIM: 610605) PREDICTED: cytoplasmic (1037) 735 133.6 3e-30 XP_011537822 (OMIM: 610606) PREDICTED: cytoplasmic ( 598) 585 108.5 6.1e-23 XP_011537821 (OMIM: 610606) PREDICTED: cytoplasmic ( 621) 585 108.5 6.3e-23 XP_011537820 (OMIM: 610606) PREDICTED: cytoplasmic ( 640) 568 105.7 4.5e-22 >>NP_085097 (OMIM: 607342) cytoplasmic polyadenylation e (561 aa) initn: 3887 init1: 3887 opt: 3887 Z-score: 3496.7 bits: 656.8 E(85289): 5e-188 Smith-Waterman score: 3887; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561) 10 20 30 40 50 60 pF1KE5 MAFPLEEEAGRIKDCWDNQEAPALSTCSNANIFRRINAILDNSLDFSRVCTTPINRGIHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_085 MAFPLEEEAGRIKDCWDNQEAPALSTCSNANIFRRINAILDNSLDFSRVCTTPINRGIHD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 HLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLTGWDRPWSTQDSDSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_085 HLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLTGWDRPWSTQDSDSSA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 QSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSVRGSRLDTRPILDSRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_085 QSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSVRGSRLDTRPILDSRS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 SSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPLKMGVGSRMDQEQAAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_085 SSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPLKMGVGSRMDQEQAAL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 AAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQAAAVNEATCTWSGQLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_085 AAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQAAAVNEATCTWSGQLP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 PRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_085 PRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 FELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_085 FELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 LDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_085 LDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYL 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 KAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_085 KAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRH 490 500 510 520 530 540 550 560 pF1KE5 SMEGLRHHSPLMRNQKNRDSS ::::::::::::::::::::: NP_085 SMEGLRHHSPLMRNQKNRDSS 550 560 >>NP_001073002 (OMIM: 607342) cytoplasmic polyadenylatio (486 aa) initn: 3372 init1: 3372 opt: 3372 Z-score: 3035.4 bits: 571.3 E(85289): 2.5e-162 Smith-Waterman score: 3372; 100.0% identity (100.0% similar) in 486 aa overlap (76-561:1-486) 50 60 70 80 90 100 pF1KE5 FSRVCTTPINRGIHDHLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLT :::::::::::::::::::::::::::::: NP_001 MLFPTSAQESSRGLPDANDLCLGLQSLSLT 10 20 30 110 120 130 140 150 160 pF1KE5 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE5 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE5 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE5 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD 220 230 240 250 260 270 350 360 370 380 390 400 pF1KE5 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP 280 290 300 310 320 330 410 420 430 440 450 460 pF1KE5 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP 340 350 360 370 380 390 470 480 490 500 510 520 pF1KE5 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ 400 410 420 430 440 450 530 540 550 560 pF1KE5 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS :::::::::::::::::::::::::::::::::::: NP_001 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS 460 470 480 >>NP_001275748 (OMIM: 607342) cytoplasmic polyadenylatio (486 aa) initn: 3372 init1: 3372 opt: 3372 Z-score: 3035.4 bits: 571.3 E(85289): 2.5e-162 Smith-Waterman score: 3372; 100.0% identity (100.0% similar) in 486 aa overlap (76-561:1-486) 50 60 70 80 90 100 pF1KE5 FSRVCTTPINRGIHDHLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLT :::::::::::::::::::::::::::::: NP_001 MLFPTSAQESSRGLPDANDLCLGLQSLSLT 10 20 30 110 120 130 140 150 160 pF1KE5 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE5 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE5 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE5 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD 220 230 240 250 260 270 350 360 370 380 390 400 pF1KE5 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP 280 290 300 310 320 330 410 420 430 440 450 460 pF1KE5 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP 340 350 360 370 380 390 470 480 490 500 510 520 pF1KE5 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ 400 410 420 430 440 450 530 540 550 560 pF1KE5 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS :::::::::::::::::::::::::::::::::::: NP_001 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS 460 470 480 >>NP_001073003 (OMIM: 607342) cytoplasmic polyadenylatio (486 aa) initn: 3372 init1: 3372 opt: 3372 Z-score: 3035.4 bits: 571.3 E(85289): 2.5e-162 Smith-Waterman score: 3372; 100.0% identity (100.0% similar) in 486 aa overlap (76-561:1-486) 50 60 70 80 90 100 pF1KE5 FSRVCTTPINRGIHDHLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLT :::::::::::::::::::::::::::::: NP_001 MLFPTSAQESSRGLPDANDLCLGLQSLSLT 10 20 30 110 120 130 140 150 160 pF1KE5 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE5 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE5 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE5 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD 220 230 240 250 260 270 350 360 370 380 390 400 pF1KE5 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP 280 290 300 310 320 330 410 420 430 440 450 460 pF1KE5 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP 340 350 360 370 380 390 470 480 490 500 510 520 pF1KE5 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ 400 410 420 430 440 450 530 540 550 560 pF1KE5 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS :::::::::::::::::::::::::::::::::::: NP_001 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS 460 470 480 >>NP_001073001 (OMIM: 607342) cytoplasmic polyadenylatio (491 aa) initn: 1942 init1: 1942 opt: 3352 Z-score: 3017.4 bits: 568.0 E(85289): 2.5e-161 Smith-Waterman score: 3352; 99.0% identity (99.0% similar) in 491 aa overlap (76-561:1-491) 50 60 70 80 90 100 pF1KE5 FSRVCTTPINRGIHDHLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLT :::::::::::::::::::::::::::::: NP_001 MLFPTSAQESSRGLPDANDLCLGLQSLSLT 10 20 30 110 120 130 140 150 160 pF1KE5 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE5 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE5 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE5 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD 220 230 240 250 260 270 350 360 370 380 390 400 pF1KE5 GKHPRCPPKG-----YVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKE :::::::::: ::::::::::::::::::::::::::::::::::::::::::::: NP_001 GKHPRCPPKGNMPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKE 280 290 300 310 320 330 410 420 430 440 450 460 pF1KE5 VQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTD 340 350 360 370 380 390 470 480 490 500 510 520 pF1KE5 KHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPF 400 410 420 430 440 450 530 540 550 560 pF1KE5 FCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS ::::::::::::::::::::::::::::::::::::::::: NP_001 FCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS 460 470 480 490 >>NP_001275749 (OMIM: 607342) cytoplasmic polyadenylatio (335 aa) initn: 2355 init1: 2355 opt: 2355 Z-score: 2124.9 bits: 402.3 E(85289): 1.3e-111 Smith-Waterman score: 2355; 100.0% identity (100.0% similar) in 335 aa overlap (227-561:1-335) 200 210 220 230 240 250 pF1KE5 HLSDLISSLRISPPLPFLSLSGGGPRDPLKMGVGSRMDQEQAALAAVTPSPTSASKRWPG :::::::::::::::::::::::::::::: NP_001 MGVGSRMDQEQAALAAVTPSPTSASKRWPG 10 20 30 260 270 280 290 300 310 pF1KE5 ASVWPSWDLLEAPKDPFSIEREARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ASVWPSWDLLEAPKDPFSIEREARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLG 40 50 60 70 80 90 320 330 340 350 360 370 pF1KE5 GVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSH 100 110 120 130 140 150 380 390 400 410 420 430 pF1KE5 DPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGML 160 170 180 190 200 210 440 450 460 470 480 490 pF1KE5 NAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFT 220 230 240 250 260 270 500 510 520 530 540 550 pF1KE5 KKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQK 280 290 300 310 320 330 560 pF1KE5 NRDSS ::::: NP_001 NRDSS >>XP_016871416 (OMIM: 610606) PREDICTED: cytoplasmic pol (314 aa) initn: 729 init1: 238 opt: 744 Z-score: 679.5 bits: 134.7 E(85289): 4.1e-31 Smith-Waterman score: 744; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:55-305) 280 290 300 310 320 330 pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS :: :::.::.: :: : .. .:: :: : XP_016 AFLDDSHGDQALSSGLSSPTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLV 30 40 50 60 70 80 340 350 360 370 380 390 pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC :.:: : .. :::::..:.:. :.::..:..:: : :: . :. .:: .. XP_016 VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC----LEEDG--KLYLCVSSPTIKD 90 100 110 120 130 400 410 420 430 440 450 pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID : ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: ::::: XP_016 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID 140 150 160 170 180 190 460 470 480 490 500 510 pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS- :: . ::: :.:::.:.::.::. :.:: ::... . . :.:.. :: :.:..: :.. XP_016 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGT 200 210 220 230 240 250 520 530 540 550 560 pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS . .:::: . .:..:.:. :: :: : . :.::... .: XP_016 RCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS 260 270 280 290 300 310 >>NP_001295122 (OMIM: 610607) cytoplasmic polyadenylatio (322 aa) initn: 728 init1: 238 opt: 742 Z-score: 677.6 bits: 134.4 E(85289): 5.3e-31 Smith-Waterman score: 742; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:63-313) 280 290 300 310 320 330 pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS :: :::.::.: :: : .. .:: :: : NP_001 LDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLI 40 50 60 70 80 90 340 350 360 370 380 390 pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC :.:: : .. :::::..:.:. :.::..:..:: . :: . :. .:: .. NP_001 VDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDAC----IEEDG--KLYLCVSSPTIKD 100 110 120 130 140 400 410 420 430 440 450 pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID : ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: ::::: NP_001 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID 150 160 170 180 190 200 460 470 480 490 500 510 pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS- :: . ::: :.:::.:.::.::. :.:: ::... .. :.:.. :: :.:.:: :.. NP_001 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGA 210 220 230 240 250 260 520 530 540 550 560 pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS . .:::: . .:..:.:. :: :: : . :.::... .: NP_001 RCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN 270 280 290 300 310 320 >>NP_001295121 (OMIM: 610607) cytoplasmic polyadenylatio (339 aa) initn: 728 init1: 238 opt: 742 Z-score: 677.3 bits: 134.4 E(85289): 5.5e-31 Smith-Waterman score: 742; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:80-330) 280 290 300 310 320 330 pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS :: :::.::.: :: : .. .:: :: : NP_001 LDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLI 50 60 70 80 90 100 340 350 360 370 380 390 pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC :.:: : .. :::::..:.:. :.::..:..:: . :: . :. .:: .. NP_001 VDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDAC----IEEDG--KLYLCVSSPTIKD 110 120 130 140 150 160 400 410 420 430 440 450 pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID : ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: ::::: NP_001 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID 170 180 190 200 210 220 460 470 480 490 500 510 pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS- :: . ::: :.:::.:.::.::. :.:: ::... .. :.:.. :: :.:.:: :.. NP_001 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGA 230 240 250 260 270 280 520 530 540 550 560 pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS . .:::: . .:..:.:. :: :: : . :.::... .: NP_001 RCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN 290 300 310 320 330 >>XP_011537819 (OMIM: 610606) PREDICTED: cytoplasmic pol (665 aa) initn: 756 init1: 238 opt: 744 Z-score: 674.9 bits: 135.0 E(85289): 7.4e-31 Smith-Waterman score: 744; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:406-656) 280 290 300 310 320 330 pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS :: :::.::.: :: : .. .:: :: : XP_011 AFLDDSHGDQALSSGLSSPTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLV 380 390 400 410 420 430 340 350 360 370 380 390 pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC :.:: : .. :::::..:.:. :.::..:..:: : :: . :. .:: .. XP_011 VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC----LEEDG--KLYLCVSSPTIKD 440 450 460 470 480 400 410 420 430 440 450 pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID : ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: ::::: XP_011 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID 490 500 510 520 530 540 460 470 480 490 500 510 pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS- :: . ::: :.:::.:.::.::. :.:: ::... . . :.:.. :: :.:..: :.. XP_011 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGT 550 560 570 580 590 600 520 530 540 550 560 pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS . .:::: . .:..:.:. :: :: : . :.::... .: XP_011 RCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS 610 620 630 640 650 660 561 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:50:43 2016 done: Tue Nov 8 05:50:44 2016 Total Scan time: 9.360 Total Display time: 0.050 Function used was FASTA [36.3.4 Apr, 2011]