FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9694, 316 aa 1>>>pF1KE9694 316 - 316 aa - 316 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.7378+/-0.000371; mu= 5.4343+/- 0.023 mean_var=195.0379+/-38.117, 0's: 0 Z-trim(118.9): 28 B-trim: 279 in 2/57 Lambda= 0.091836 statistics sampled from 32351 (32380) to 32351 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.38), width: 16 Scan time: 7.100 The best scores are: opt bits E(85289) NP_150628 (OMIM: 614718) small kinetochore-associa ( 316) 1990 275.9 7.6e-74 NP_001136233 (OMIM: 614718) small kinetochore-asso ( 286) 1731 241.5 1.5e-63 NP_001136234 (OMIM: 614718) small kinetochore-asso ( 241) 1460 205.5 8.7e-53 >>NP_150628 (OMIM: 614718) small kinetochore-associated (316 aa) initn: 1990 init1: 1990 opt: 1990 Z-score: 1446.7 bits: 275.9 E(85289): 7.6e-74 Smith-Waterman score: 1990; 98.7% identity (99.1% similar) in 316 aa overlap (1-316:1-316) 10 20 30 40 50 60 pF1KE9 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQEADLAGGTTVAAGNLLNESEK ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: NP_150 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 DCGQDRRAPGVQPCLLVTMTSVVKTVYSLQPSSALSGGQPADTQTRATSKSLLPVRSKEV :::::::::::::: :::::::::::::::: :::::::::::::::::::::::::::: NP_150 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGGETLASRQE :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: NP_150 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGSETLASRQE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQALKVKLEMKEERVRFLEQQTLCNNQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQALKVKLEMKEERVRFLEQQTLCNNQV 250 260 270 280 290 300 310 pF1KE9 NDLTTALKEMEQLLEM :::::::::::::::: NP_150 NDLTTALKEMEQLLEM 310 >>NP_001136233 (OMIM: 614718) small kinetochore-associat (286 aa) initn: 1731 init1: 1731 opt: 1731 Z-score: 1261.8 bits: 241.5 E(85289): 1.5e-63 Smith-Waterman score: 1731; 98.5% identity (98.9% similar) in 274 aa overlap (1-274:1-274) 10 20 30 40 50 60 pF1KE9 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQEADLAGGTTVAAGNLLNESEK ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: NP_001 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 DCGQDRRAPGVQPCLLVTMTSVVKTVYSLQPSSALSGGQPADTQTRATSKSLLPVRSKEV :::::::::::::: :::::::::::::::: :::::::::::::::::::::::::::: NP_001 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGGETLASRQE :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: NP_001 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGSETLASRQE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQALKVKLEMKEERVRFLEQQTLCNNQV :::::::::::::::::::::::::::::::::: NP_001 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQIAWMNHGILHQM 250 260 270 280 310 pF1KE9 NDLTTALKEMEQLLEM >>NP_001136234 (OMIM: 614718) small kinetochore-associat (241 aa) initn: 1460 init1: 1460 opt: 1460 Z-score: 1068.7 bits: 205.5 E(85289): 8.7e-53 Smith-Waterman score: 1460; 98.7% identity (98.7% similar) in 228 aa overlap (1-228:1-228) 10 20 30 40 50 60 pF1KE9 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQEADLAGGTTVAAGNLLNESEK ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: NP_001 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 DCGQDRRAPGVQPCLLVTMTSVVKTVYSLQPSSALSGGQPADTQTRATSKSLLPVRSKEV :::::::::::::: :::::::::::::::: :::::::::::::::::::::::::::: NP_001 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGGETLASRQE :::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPVAVRNFARGAEA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQALKVKLEMKEERVRFLEQQTLCNNQV NP_001 F 316 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:36:44 2016 done: Tue Nov 8 10:36:45 2016 Total Scan time: 7.100 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]