FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6557, 153 aa 1>>>pF1KE6557 153 - 153 aa - 153 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5026+/-0.000312; mu= 10.5629+/- 0.019 mean_var=59.8363+/-11.842, 0's: 0 Z-trim(115.0): 7 B-trim: 38 in 1/55 Lambda= 0.165803 statistics sampled from 25221 (25228) to 25221 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.296), width: 16 Scan time: 5.230 The best scores are: opt bits E(85289) NP_758958 (OMIM: 181500,607408) D-amino acid oxida ( 153) 1025 253.1 1.3e-67 XP_005254099 (OMIM: 181500,607408) PREDICTED: D-am ( 126) 627 157.9 4.8e-39 NP_001155286 (OMIM: 181500,607408) D-amino acid ox ( 82) 572 144.7 2.9e-35 NP_001155284 (OMIM: 181500,607408) D-amino acid ox ( 125) 415 107.2 8.7e-24 >>NP_758958 (OMIM: 181500,607408) D-amino acid oxidase a (153 aa) initn: 1025 init1: 1025 opt: 1025 Z-score: 1335.1 bits: 253.1 E(85289): 1.3e-67 Smith-Waterman score: 1025; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153) 10 20 30 40 50 60 pF1KE6 MLEKLMGADSLQLFRSRYTLGKIYFIGFQRSILLSKSENSLNSIAKETEEGRETVTRKEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_758 MLEKLMGADSLQLFRSRYTLGKIYFIGFQRSILLSKSENSLNSIAKETEEGRETVTRKEG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 WKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSHVGKVFMARNYEFLAYEASK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_758 WKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSHVGKVFMARNYEFLAYEASK 70 80 90 100 110 120 130 140 150 pF1KE6 DRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE ::::::::::::::::::::::::::::::::: NP_758 DRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE 130 140 150 >>XP_005254099 (OMIM: 181500,607408) PREDICTED: D-amino (126 aa) initn: 627 init1: 627 opt: 627 Z-score: 822.0 bits: 157.9 E(85289): 4.8e-39 Smith-Waterman score: 627; 96.9% identity (98.0% similar) in 98 aa overlap (1-98:1-98) 10 20 30 40 50 60 pF1KE6 MLEKLMGADSLQLFRSRYTLGKIYFIGFQRSILLSKSENSLNSIAKETEEGRETVTRKEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MLEKLMGADSLQLFRSRYTLGKIYFIGFQRSILLSKSENSLNSIAKETEEGRETVTRKEG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 WKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSHVGKVFMARNYEFLAYEASK :::::::::::::::::::::::::::::::::: .: XP_005 WKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAEHSKVILNGNLHCHFKRISQIFAGHFM 70 80 90 100 110 120 130 140 150 pF1KE6 DRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE XP_005 EGDTEA >>NP_001155286 (OMIM: 181500,607408) D-amino acid oxidas (82 aa) initn: 572 init1: 572 opt: 572 Z-score: 754.0 bits: 144.7 E(85289): 2.9e-35 Smith-Waterman score: 572; 100.0% identity (100.0% similar) in 82 aa overlap (72-153:1-82) 50 60 70 80 90 100 pF1KE6 NSIAKETEEGRETVTRKEGWKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSH :::::::::::::::::::::::::::::: NP_001 MAQRHLQRSLCPWVSYLPQPYAELEEVSSH 10 20 30 110 120 130 140 150 pF1KE6 VGKVFMARNYEFLAYEASKDRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VGKVFMARNYEFLAYEASKDRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE 40 50 60 70 80 >>NP_001155284 (OMIM: 181500,607408) D-amino acid oxidas (125 aa) initn: 400 init1: 400 opt: 415 Z-score: 548.0 bits: 107.2 E(85289): 8.7e-24 Smith-Waterman score: 415; 88.6% identity (92.9% similar) in 70 aa overlap (84-153:57-125) 60 70 80 90 100 110 pF1KE6 TVTRKEGWKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSHVGKVFMARNYEF : . .:: .::::::::::::::::::: NP_001 PMQRAGTSNQWNMGKVMTLDSGDEVTFHKTWPTETGSPY-RLEEVSSHVGKVFMARNYEF 30 40 50 60 70 80 120 130 140 150 pF1KE6 LAYEASKDRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE :::::::::::::::::::::::::::::::::::::::: NP_001 LAYEASKDRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE 90 100 110 120 153 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:23:36 2016 done: Tue Nov 8 14:23:37 2016 Total Scan time: 5.230 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]