FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6557, 153 aa
  1>>>pF1KE6557 153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5441+/-0.000697; mu= 10.4194+/- 0.042
 mean_var=60.0551+/-11.837, 0's: 0 Z-trim(108.1): 10  B-trim: 0 in 0/52
 Lambda= 0.165500
 statistics sampled from 9960 (9965) to 9960 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.306), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS41905.1 DAOA gene_id:267012|Hs108|chr13        ( 153) 1025 252.6 6.7e-68
CCDS53880.1 DAOA gene_id:267012|Hs108|chr13        (  82)  572 144.4 1.4e-35
CCDS59242.1 DAOA gene_id:267012|Hs108|chr13        ( 125)  415 107.0 3.9e-24


>>CCDS41905.1 DAOA gene_id:267012|Hs108|chr13             (153 aa)
 initn: 1025 init1: 1025 opt: 1025  Z-score: 1332.5  bits: 252.6 E(32554): 6.7e-68
Smith-Waterman score: 1025; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE6 MLEKLMGADSLQLFRSRYTLGKIYFIGFQRSILLSKSENSLNSIAKETEEGRETVTRKEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLEKLMGADSLQLFRSRYTLGKIYFIGFQRSILLSKSENSLNSIAKETEEGRETVTRKEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 WKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSHVGKVFMARNYEFLAYEASK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSHVGKVFMARNYEFLAYEASK
               70        80        90       100       110       120

              130       140       150   
pF1KE6 DRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE
       :::::::::::::::::::::::::::::::::
CCDS41 DRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE
              130       140       150   

>>CCDS53880.1 DAOA gene_id:267012|Hs108|chr13             (82 aa)
 initn: 572 init1: 572 opt: 572  Z-score: 752.4  bits: 144.4 E(32554): 1.4e-35
Smith-Waterman score: 572; 100.0% identity (100.0% similar) in 82 aa overlap (72-153:1-82)

              50        60        70        80        90       100 
pF1KE6 NSIAKETEEGRETVTRKEGWKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSH
                                     ::::::::::::::::::::::::::::::
CCDS53                               MAQRHLQRSLCPWVSYLPQPYAELEEVSSH
                                             10        20        30

             110       120       130       140       150   
pF1KE6 VGKVFMARNYEFLAYEASKDRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VGKVFMARNYEFLAYEASKDRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE
               40        50        60        70        80  

>>CCDS59242.1 DAOA gene_id:267012|Hs108|chr13             (125 aa)
 initn: 400 init1: 400 opt: 415  Z-score: 546.8  bits: 107.0 E(32554): 3.9e-24
Smith-Waterman score: 415; 88.6% identity (92.9% similar) in 70 aa overlap (84-153:57-125)

            60        70        80        90       100       110   
pF1KE6 TVTRKEGWKRRHEDGYLEMAQRHLQRSLCPWVSYLPQPYAELEEVSSHVGKVFMARNYEF
                                     : .   .:: .:::::::::::::::::::
CCDS59 PMQRAGTSNQWNMGKVMTLDSGDEVTFHKTWPTETGSPY-RLEEVSSHVGKVFMARNYEF
         30        40        50        60         70        80     

           120       130       140       150   
pF1KE6 LAYEASKDRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE
       ::::::::::::::::::::::::::::::::::::::::
CCDS59 LAYEASKDRRQPLERMWTCNYNQQKDQSCNHKEITSTKAE
          90       100       110       120     




153 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:23:36 2016 done: Tue Nov  8 14:23:36 2016
 Total Scan time:  1.710 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]