FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1624, 137 aa
  1>>>pF1KE1624 137 - 137 aa - 137 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9454+/-0.000256; mu= 9.3981+/- 0.016
 mean_var=83.6929+/-16.915, 0's: 0 Z-trim(121.6): 1  B-trim: 488 in 1/54
 Lambda= 0.140194
 statistics sampled from 38417 (38418) to 38417 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.45), width:  16
 Scan time:  5.600

The best scores are:                                      opt bits E(85289)
NP_054778 (OMIM: 610077) regulator of cell cycle R ( 137)  872 184.7 3.9e-47


>>NP_054778 (OMIM: 610077) regulator of cell cycle RGCC   (137 aa)
 initn: 872 init1: 872 opt: 872  Z-score: 967.1  bits: 184.7 E(85289): 3.9e-47
Smith-Waterman score: 872; 100.0% identity (100.0% similar) in 137 aa overlap (1-137:1-137)

               10        20        30        40        50        60
pF1KE1 MKPPAAQGSPAAAAAAAPALDSAAAEDLSDALCEFDAVLADFASPFHERHFHYEEHLERM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MKPPAAQGSPAAAAAAAPALDSAAAEDLSDALCEFDAVLADFASPFHERHFHYEEHLERM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KRRSSASVSDSSGFSDSESADSLYRNSFSFSDEKLNSPTDSTPALLSATVTPQKAKLGDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 KRRSSASVSDSSGFSDSESADSLYRNSFSFSDEKLNSPTDSTPALLSATVTPQKAKLGDT
               70        80        90       100       110       120

              130       
pF1KE1 KELEAFIADLDKTLASM
       :::::::::::::::::
NP_054 KELEAFIADLDKTLASM
              130       




137 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:45:00 2016 done: Sun Nov  6 05:45:01 2016
 Total Scan time:  5.600 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]