FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1624, 137 aa
  1>>>pF1KE1624 137 - 137 aa - 137 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8572+/-0.000582; mu= 9.8182+/- 0.036
 mean_var=79.5316+/-15.885, 0's: 0 Z-trim(114.2): 4  B-trim: 112 in 1/52
 Lambda= 0.143815
 statistics sampled from 14771 (14772) to 14771 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.454), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS41880.1 RGCC gene_id:28984|Hs108|chr13         ( 137)  872 189.1 7.4e-49


>>CCDS41880.1 RGCC gene_id:28984|Hs108|chr13              (137 aa)
 initn: 872 init1: 872 opt: 872  Z-score: 990.6  bits: 189.1 E(32554): 7.4e-49
Smith-Waterman score: 872; 100.0% identity (100.0% similar) in 137 aa overlap (1-137:1-137)

               10        20        30        40        50        60
pF1KE1 MKPPAAQGSPAAAAAAAPALDSAAAEDLSDALCEFDAVLADFASPFHERHFHYEEHLERM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MKPPAAQGSPAAAAAAAPALDSAAAEDLSDALCEFDAVLADFASPFHERHFHYEEHLERM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KRRSSASVSDSSGFSDSESADSLYRNSFSFSDEKLNSPTDSTPALLSATVTPQKAKLGDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KRRSSASVSDSSGFSDSESADSLYRNSFSFSDEKLNSPTDSTPALLSATVTPQKAKLGDT
               70        80        90       100       110       120

              130       
pF1KE1 KELEAFIADLDKTLASM
       :::::::::::::::::
CCDS41 KELEAFIADLDKTLASM
              130       




137 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:45:00 2016 done: Sun Nov  6 05:45:00 2016
 Total Scan time:  1.950 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]