(Circular) (Six-base) MAPSORT of: pFN21AE6638.seq Check: 4919 from: 1 to: 5416 pFN21AE6638 5416 bp With 182 enzymes: SgfI * March 18, 2015 14:53 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3226 278 Size: 53 83 186 936 1690 2468 Fragments arranged by size: 2468 1690 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2280 2759 1937 Size: 343 479 4594 Fragments arranged by size: 4594 479 343 Acc65I G'GTAC_C Cuts at: 2247 2737 2247 Size: 490 4926 AclI AA'CG_TT Cuts at: 1563 3543 3916 1563 Size: 1980 373 3063 Fragments arranged by size: 3063 1980 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2246 2537 3479 4863 5131 1632 Size: 614 291 942 1384 268 1917 Fragments arranged by size: 1917 1384 942 614 291 268 AfeI AGC'GCT Cuts at: 2419 2419 Size: 5416 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5219 AflIII A'CryG_T Cuts at: 1203 2139 2193 2259 4315 5292 1203 Size: 936 54 66 2056 977 1327 Fragments arranged by size: 2056 1327 977 936 66 54 AgeI A'CCGG_T Cuts at: 4247 4247 Size: 5416 AhdI GACnn_n'nnGTC Cuts at: 2131 4145 2131 Size: 2014 3402 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5416 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2114 1184 Size: 930 4486 AlwNI CAG_nnn'CTG Cuts at: 2224 2554 2694 3159 4731 2224 Size: 330 140 465 1572 2909 Fragments arranged by size: 2909 1572 465 330 140 ApaLI G'TGCA_C Cuts at: 3473 4629 3473 Size: 1156 4260 ApoI r'AATT_y Cuts at: 1493 2725 2951 3103 5212 1493 Size: 1232 226 152 2109 1697 Fragments arranged by size: 2109 1697 1232 226 152 AseI AT'TA_AT Cuts at: 160 1032 3970 160 Size: 872 2938 1606 Fragments arranged by size: 2938 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5416 AvaI C'yCGr_G Cuts at: 1870 1943 2668 2741 1870 Size: 73 725 73 4545 Fragments arranged by size: 4545 725 73 73 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 2648 2681 2648 Size: 33 5383 BamHI G'GATC_C Cuts at: 2746 3113 2746 Size: 367 5049 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2247 2737 4192 618 Size: 325 217 627 460 490 1455 1842 Fragments arranged by size: 1842 1455 627 490 460 325 217 BanII G_rGCy'C Cuts at: 1391 2453 2646 2735 1391 Size: 1062 193 89 4072 Fragments arranged by size: 4072 1062 193 89 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4445 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3607 3641 1903 Size: 34 1670 34 3678 Fragments arranged by size: 3678 1670 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3308 4518 3308 Size: 1210 4206 BclI T'GATC_A Cuts at: 1548 2685 1548 Size: 1137 4279 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4027 136 Size: 107 122 71 631 605 2355 1525 Fragments arranged by size: 2355 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5411 5411 Size: 5416 BlpI GC'TnA_GC Cuts at: 2833 2833 Size: 5416 Bme1580I G_kGCm'C Cuts at: 1790 3477 4633 1790 Size: 1687 1156 2573 Fragments arranged by size: 2573 1687 1156 BmgBI CAC'GTC Cuts at: 1318 2194 1318 Size: 876 4540 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3147 4105 442 Size: 416 53 83 399 24 1730 958 1753 Fragments arranged by size: 1753 1730 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5416 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2273 2630 4076 1239 Size: 1034 357 1446 2579 Fragments arranged by size: 2579 1446 1034 357 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3541 4406 4704 3541 Size: 865 298 4253 Fragments arranged by size: 4253 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4079 882 Size: 617 2580 2219 Fragments arranged by size: 2580 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2140 2298 3207 493 Size: 711 936 158 909 2702 Fragments arranged by size: 2702 936 909 711 158 BsaBI GATnn'nnATC Cuts at: 5410 5410 Size: 5416 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3223 3605 4240 275 Size: 53 83 186 936 1690 382 635 1451 Fragments arranged by size: 1690 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3849 4247 4521 4668 5079 3849 Size: 398 274 147 411 4186 Fragments arranged by size: 4186 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2246 2276 1178 Size: 30 165 30 843 30 4318 Fragments arranged by size: 4318 843 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5416 BseYI C'CCAG_C Cuts at: 2400 2437 4619 5115 2400 Size: 37 2182 496 2701 Fragments arranged by size: 2701 2182 496 37 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4843 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2365 2866 3627 4655 1540 Size: 275 186 364 501 761 1028 2301 Fragments arranged by size: 2301 1028 761 501 364 275 186 BsiHKAI G_wGCw'C Cuts at: 2669 3477 3562 4633 2669 Size: 808 85 1071 3452 Fragments arranged by size: 3452 1071 808 85 BsiWI C'GTAC_G Cuts at: 2298 2298 Size: 5416 BsmI GAATG_Cn' Cuts at: 2927 3020 2927 Size: 93 5323 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2453 2646 2669 2735 3477 3562 4633 Size: 399 663 193 23 66 742 85 1071 Cuts at: 4633 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 663 399 193 85 66 23 BspEI T'CCGG_A Cuts at: 5079 5079 Size: 5416 BspHI T'CATG_A Cuts at: 3305 5035 3305 Size: 1730 3686 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2771 844 Size: 1927 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2351 3303 1394 Size: 429 528 952 3507 Fragments arranged by size: 3507 952 528 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3911 4085 65 Size: 1183 2663 174 1396 Fragments arranged by size: 2663 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4060 4247 1700 Size: 110 2250 187 2869 Fragments arranged by size: 2869 2250 187 110 BsrGI T'GTAC_A Cuts at: 96 2142 96 Size: 2046 3370 BssHII G'CGCG_C Cuts at: 1925 2101 1925 Size: 176 5240 BssSI C'ACGA_G Cuts at: 3476 4488 3476 Size: 1012 4404 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5416 BstBI TT'CG_AA Cuts at: 4220 4220 Size: 5416 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5416 BstXI CCAn_nnnn'nTGG Cuts at: 2482 2482 Size: 5416 BstYI r'GATC_y Cuts at: 1972 2746 3113 3498 3515 4967 5053 5065 5411 Size: 774 367 385 17 1452 86 12 346 Cuts at: 5411 1972 Size: 1977 Fragments arranged by size: 1977 1452 774 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2386 2595 513 Size: 552 939 382 209 3334 Fragments arranged by size: 3334 939 552 382 209 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4677 Fragments arranged by size: 4677 683 56 BtsI GCAGTG_nn' Cuts at: 2932 3726 3746 2932 Size: 794 20 4602 Fragments arranged by size: 4602 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5416 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5381 DraI TTT'AAA Cuts at: 2720 2720 Size: 5416 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4423 809 Size: 507 3107 1802 Fragments arranged by size: 3107 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2540 2863 3752 Size: 54 1425 50 275 18 710 323 889 Cuts at: 3752 5381 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 710 323 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2863 1537 Size: 275 1051 4090 Fragments arranged by size: 4090 1051 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3346 1353 Size: 1993 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4003 4377 4523 387 Size: 1064 138 2414 374 146 1280 Fragments arranged by size: 2414 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2246 2273 2537 2630 3479 4076 4863 Size: 393 614 27 264 93 849 597 787 Cuts at: 4863 5131 1239 Size: 268 1524 Fragments arranged by size: 1524 849 787 614 597 393 268 264 93 27 EcoO109I rG'GnC_Cy Cuts at: 2441 2441 Size: 5416 EcoRI G'AATT_C Cuts at: 2725 3103 2725 Size: 378 5038 FspI TGC'GCA Cuts at: 3922 3922 Size: 5416 HaeII r_GCGC'y Cuts at: 1678 2421 4563 1678 Size: 743 2142 2531 Fragments arranged by size: 2531 2142 743 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2117 2149 4057 4089 4131 Size: 32 135 32 545 32 1908 32 42 Cuts at: 4131 4163 1373 Size: 32 2626 Fragments arranged by size: 2626 1908 545 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2760 3006 669 Size: 988 281 822 246 3079 Fragments arranged by size: 3079 988 822 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5416 HpaI GTT'AAC Cuts at: 3006 3006 Size: 5416 KpnI G_GTAC'C Cuts at: 2251 2741 2251 Size: 490 4926 MfeI C'AATT_G Cuts at: 3015 3015 Size: 5416 MluI A'CGCG_T Cuts at: 5292 5292 Size: 5416 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4530 4714 1305 Size: 3225 184 2007 Fragments arranged by size: 3225 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3594 Fragments arranged by size: 3594 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2009 2162 3374 3733 3892 518 Size: 648 843 153 1212 359 159 2042 Fragments arranged by size: 2042 1212 843 648 359 159 153 MspA1I CmG'CkG Cuts at: 1606 2404 2437 2551 2604 2832 3509 4657 4902 Size: 798 33 114 53 228 677 1148 245 Cuts at: 4902 1606 Size: 2120 Fragments arranged by size: 2120 1148 798 677 245 228 114 53 33 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3925 Fragments arranged by size: 3925 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5416 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5416 NotI GC'GGCC_GC Cuts at: 2863 2863 Size: 5416 NspI r_CATG'y Cuts at: 1132 1229 2509 2774 4319 1132 Size: 97 1280 265 1545 2229 Fragments arranged by size: 2229 1545 1280 265 97 PasI CC'CwG_GG Cuts at: 1348 2174 1348 Size: 826 4590 PciI A'CATG_T Cuts at: 4315 4315 Size: 5416 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5416 PmeI GTTT'AAAC Cuts at: 2720 2720 Size: 5416 PmlI CAC'GTG Cuts at: 2140 2140 Size: 5416 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3485 3517 4998 5030 3485 Size: 32 1481 32 3871 Fragments arranged by size: 3871 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5416 PsiI TTA'TAA Cuts at: 2986 2986 Size: 5416 PstI C_TGCA'G Cuts at: 830 2436 2768 830 Size: 1606 332 3478 Fragments arranged by size: 3478 1606 332 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5416 PvuII CAG'CTG Cuts at: 2404 2437 2404 Size: 33 5383 SalI G'TCGA_C Cuts at: 1936 2758 1936 Size: 822 4594 SbfI CC_TGCA'GG Cuts at: 2768 2768 Size: 5416 ScaI AGT'ACT Cuts at: 3664 5376 3664 Size: 1712 3704 SfcI C'TryA_G Cuts at: 826 1045 2432 2764 3899 4580 4771 826 Size: 219 1387 332 1135 681 191 1471 Fragments arranged by size: 1471 1387 1135 681 332 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5416 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5416 SmaI CCC'GGG Cuts at: 1872 2743 1872 Size: 871 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3520 4421 4683 820 Size: 197 926 1577 901 262 1553 Fragments arranged by size: 1577 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3207 493 Size: 2714 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5416 SphI G_CATG'C Cuts at: 1132 2509 2774 1132 Size: 1377 265 3774 Fragments arranged by size: 3774 1377 265 SspI AAT'ATT Cuts at: 5 52 3340 5 Size: 47 3288 2081 Fragments arranged by size: 3288 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5416 StyI C'CwwG_G Cuts at: 513 1065 2004 2855 513 Size: 552 939 851 3074 Fragments arranged by size: 3074 939 851 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2582 3443 3460 3613 3798 4243 325 Size: 1255 1002 861 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1002 861 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2142 3662 5374 Size: 274 80 33 51 1443 165 1520 1712 Cuts at: 5374 96 Size: 138 Fragments arranged by size: 1712 1520 1443 274 165 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2378 2410 5376 5408 2378 Size: 32 2966 32 2386 Fragments arranged by size: 2966 2386 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5416 XbaI T'CTAG_A Cuts at: 2752 2752 Size: 5416 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2482 2482 Size: 5416 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5416 XmaI C'CCGG_G Cuts at: 1870 2741 1870 Size: 871 4545 XmnI GAAnn'nnTTC Cuts at: 3545 3545 Size: 5416 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3224 276 Size: 53 83 186 936 1690 2468 Fragments arranged by size: 2468 1690 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PmlI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BbeI BbvCI BfrBI BplI Bpu10I BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI