FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5242, 201 aa
  1>>>pF1KE5242 201 - 201 aa - 201 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5129+/-0.000882; mu= 11.8130+/- 0.053
 mean_var=62.9837+/-12.311, 0's: 0 Z-trim(105.4): 79  B-trim: 27 in 1/50
 Lambda= 0.161607
 statistics sampled from 8346 (8425) to 8346 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.259), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS41643.1 PTPMT1 gene_id:114971|Hs108|chr11      ( 201) 1316 315.3 1.6e-86
CCDS44593.1 PTPMT1 gene_id:114971|Hs108|chr11      ( 151)  384 98.0 3.1e-21


>>CCDS41643.1 PTPMT1 gene_id:114971|Hs108|chr11           (201 aa)
 initn: 1316 init1: 1316 opt: 1316  Z-score: 1667.0  bits: 315.3 E(32554): 1.6e-86
Smith-Waterman score: 1316; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KE5 MAATALLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAATALLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 QDENVRGVITMNEEYETRFLCNSSQEWKRLGVEQLRLSTVDMTGIPTLDNLQKGVQFALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QDENVRGVITMNEEYETRFLCNSSQEWKRLGVEQLRLSTVDMTGIPTLDNLQKGVQFALK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 YQSLGQCVYVHCKAGRSRSATMVAAYLIQVHKWSPEEAVRAIAKIRSYIHIRPGQLDVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YQSLGQCVYVHCKAGRSRSATMVAAYLIQVHKWSPEEAVRAIAKIRSYIHIRPGQLDVLK
              130       140       150       160       170       180

              190       200 
pF1KE5 EFHKQITARATKDGTFVISKT
       :::::::::::::::::::::
CCDS41 EFHKQITARATKDGTFVISKT
              190       200 

>>CCDS44593.1 PTPMT1 gene_id:114971|Hs108|chr11           (151 aa)
 initn: 384 init1: 384 opt: 384  Z-score: 494.7  bits: 98.0 E(32554): 3.1e-21
Smith-Waterman score: 384; 98.3% identity (100.0% similar) in 59 aa overlap (1-59:1-59)

               10        20        30        40        50        60
pF1KE5 MAATALLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. 
CCDS44 MAATALLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 QDENVRGVITMNEEYETRFLCNSSQEWKRLGVEQLRLSTVDMTGIPTLDNLQKGVQFALK
                                                                   
CCDS44 RAGEPGPLPRPRRSVPVGPLGSPPSLLSHLFASAAGTGRERARGDHHERGVRDEVPVQLF
               70        80        90       100       110       120




201 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:48:52 2016 done: Mon Nov  7 22:48:52 2016
 Total Scan time:  1.880 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]