(Circular) (Six-base) MAPSORT of: pFN21AE1867.seq Check: 5440 from: 1 to: 5575 pFN21AE1867 5575 bp With 182 enzymes: SgfI * August 16, 2010 14:44 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2579 2579 Size: 5575 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2781 3385 278 Size: 53 83 186 936 1245 604 2468 Fragments arranged by size: 2468 1245 936 604 186 83 53 AccI GT'mk_AC Cuts at: 1937 2918 1937 Size: 981 4594 Acc65I G'GTAC_C Cuts at: 2896 2896 Size: 5575 AclI AA'CG_TT Cuts at: 1563 3702 4075 1563 Size: 2139 373 3063 Fragments arranged by size: 3063 2139 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2242 2255 3638 5022 5290 1632 Size: 610 13 1383 1384 268 1917 Fragments arranged by size: 1917 1384 1383 610 268 13 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5378 AflIII A'CryG_T Cuts at: 1203 4474 5451 1203 Size: 3271 977 1327 Fragments arranged by size: 3271 1327 977 AgeI A'CCGG_T Cuts at: 4406 4406 Size: 5575 AhdI GACnn_n'nnGTC Cuts at: 4304 4304 Size: 5575 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5575 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2352 1184 Size: 1168 4407 AlwNI CAG_nnn'CTG Cuts at: 2272 2290 3318 4890 2272 Size: 18 1028 1572 2957 Fragments arranged by size: 2957 1572 1028 18 ApaI G_GGCC'C Cuts at: 2500 2500 Size: 5575 ApaLI G'TGCA_C Cuts at: 3632 4788 3632 Size: 1156 4419 ApoI r'AATT_y Cuts at: 1493 2460 2884 3110 3262 5371 1493 Size: 967 424 226 152 2109 1697 Fragments arranged by size: 2109 1697 967 424 226 152 AseI AT'TA_AT Cuts at: 160 1032 4129 160 Size: 872 3097 1606 Fragments arranged by size: 3097 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5575 AvaI C'yCGr_G Cuts at: 1870 1943 2900 1870 Size: 73 957 4545 Fragments arranged by size: 4545 957 73 BamHI G'GATC_C Cuts at: 2490 2905 3272 2490 Size: 415 367 4793 Fragments arranged by size: 4793 415 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2219 2896 4351 618 Size: 325 217 627 432 677 1455 1842 Fragments arranged by size: 1842 1455 677 627 432 325 217 BanII G_rGCy'C Cuts at: 1391 2171 2500 2595 2894 1391 Size: 780 329 95 299 4072 Fragments arranged by size: 4072 780 329 299 95 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4604 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3766 3800 1903 Size: 34 50 34 1745 34 3678 Fragments arranged by size: 3678 1745 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3467 4677 3467 Size: 1210 4365 BclI T'GATC_A Cuts at: 1548 1548 Size: 5575 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4186 136 Size: 107 122 71 631 605 2514 1525 Fragments arranged by size: 2514 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5570 5570 Size: 5575 BlpI GC'TnA_GC Cuts at: 2992 2992 Size: 5575 Bme1580I G_kGCm'C Cuts at: 1790 2158 2222 2500 2765 3636 4792 1790 Size: 368 64 278 265 871 1156 2573 Fragments arranged by size: 2573 1156 871 368 278 265 64 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5575 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2655 3306 4264 Size: 416 53 83 399 24 1238 651 958 Cuts at: 4264 442 Size: 1753 Fragments arranged by size: 1753 1238 958 651 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5575 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2463 4235 1239 Size: 1224 1772 2579 Fragments arranged by size: 2579 1772 1224 Bpu10I CC'TnA_GC Cuts at: 2170 2170 Size: 5575 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3700 4565 4863 3700 Size: 865 298 4412 Fragments arranged by size: 4412 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2039 4238 882 Size: 617 540 2199 2219 Fragments arranged by size: 2219 2199 617 540 BsaAI yAC'GTr Cuts at: 493 1204 3366 493 Size: 711 2162 2702 Fragments arranged by size: 2702 2162 711 BsaBI GATnn'nnATC Cuts at: 5569 5569 Size: 5575 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2778 3382 3764 4399 Size: 53 83 186 936 1245 604 382 635 Cuts at: 4399 275 Size: 1451 Fragments arranged by size: 1451 1245 936 635 604 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2319 4008 4406 4680 4827 5238 2319 Size: 1689 398 274 147 411 2656 Fragments arranged by size: 2656 1689 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2047 2077 2093 2123 1178 Size: 30 165 30 644 30 16 30 4630 Fragments arranged by size: 4630 644 165 30 30 30 30 16 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2012 2114 1186 Size: 826 102 4647 Fragments arranged by size: 4647 826 102 BseYI C'CCAG_C Cuts at: 2151 2179 2202 4778 5274 2151 Size: 28 23 2576 496 2452 Fragments arranged by size: 2576 2452 496 28 23 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5002 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3025 3786 4814 1540 Size: 275 186 1024 761 1028 2301 Fragments arranged by size: 2301 1028 1024 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2520 3636 3721 4792 2520 Size: 1116 85 1071 3303 Fragments arranged by size: 3303 1116 1071 85 BsmI GAATG_Cn' Cuts at: 2404 3086 3179 2404 Size: 682 93 4800 Fragments arranged by size: 4800 682 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2158 2171 2222 2500 2520 2595 2765 Size: 399 368 13 51 278 20 75 170 Cuts at: 2765 2894 3636 3721 4792 1391 Size: 129 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 368 278 170 129 85 75 51 20 13 BspEI T'CCGG_A Cuts at: 2319 5238 2319 Size: 2919 2656 BspHI T'CATG_A Cuts at: 3464 5194 3464 Size: 1730 3845 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2196 2579 2930 844 Size: 1352 383 351 3489 Fragments arranged by size: 3489 1352 383 351 BsrBI CCG'CTC Cuts at: 1394 1823 3462 1394 Size: 429 1639 3507 Fragments arranged by size: 3507 1639 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4070 4244 65 Size: 1183 2822 174 1396 Fragments arranged by size: 2822 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4219 4406 1700 Size: 110 2409 187 2869 Fragments arranged by size: 2869 2409 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5575 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5575 BssSI C'ACGA_G Cuts at: 3635 4647 3635 Size: 1012 4563 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5575 BstBI TT'CG_AA Cuts at: 4379 4379 Size: 5575 BstEII G'GTnAC_C Cuts at: 1184 2183 1184 Size: 999 4576 BstXI CCAn_nnnn'nTGG Cuts at: 2643 2643 Size: 5575 BstYI r'GATC_y Cuts at: 1972 2370 2490 2905 3272 3657 3674 5126 5212 Size: 398 120 415 367 385 17 1452 86 Cuts at: 5212 5224 5570 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 415 398 385 367 346 120 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2248 513 Size: 552 1183 3840 Fragments arranged by size: 3840 1183 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4836 Fragments arranged by size: 4836 683 56 BtsI GCAGTG_nn' Cuts at: 3091 3885 3905 3091 Size: 794 20 4761 Fragments arranged by size: 4761 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5575 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5540 DraI TTT'AAA Cuts at: 2879 2879 Size: 5575 DraIII CAC_nnn'GTG Cuts at: 2162 2162 Size: 5575 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4582 809 Size: 507 3266 1802 Fragments arranged by size: 3266 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2674 3022 3911 Size: 54 1425 50 275 18 844 348 889 Cuts at: 3911 5540 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 844 348 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3022 1537 Size: 275 1210 4090 Fragments arranged by size: 4090 1210 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2030 3505 1353 Size: 677 1475 3423 Fragments arranged by size: 3423 1475 677 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4162 4536 4682 387 Size: 1064 138 2573 374 146 1280 Fragments arranged by size: 2573 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2242 2255 2463 3638 4235 5022 5290 Size: 393 610 13 208 1175 597 787 268 Cuts at: 5290 1239 Size: 1524 Fragments arranged by size: 1524 1175 787 610 597 393 268 208 13 EcoNI CCTnn'n_nnAGG Cuts at: 2027 2027 Size: 5575 EcoRI G'AATT_C Cuts at: 2884 3262 2884 Size: 378 5197 FspI TGC'GCA Cuts at: 4081 4081 Size: 5575 HaeII r_GCGC'y Cuts at: 1678 4722 1678 Size: 3044 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2093 2125 2475 2507 2763 Size: 32 135 32 521 32 350 32 256 Cuts at: 2763 2795 2800 2832 4216 4248 4290 4322 1373 Size: 32 5 32 1384 32 42 32 2626 Fragments arranged by size: 2626 1384 521 350 256 135 42 32 32 32 32 32 32 32 32 5 HincII GTy'rAC Cuts at: 669 1657 1938 2919 3165 669 Size: 988 281 981 246 3079 Fragments arranged by size: 3079 988 981 281 246 HindIII A'AGCT_T Cuts at: 748 2331 748 Size: 1583 3992 HpaI GTT'AAC Cuts at: 3165 3165 Size: 5575 KpnI G_GTAC'C Cuts at: 2900 2900 Size: 5575 MfeI C'AATT_G Cuts at: 3174 3174 Size: 5575 MluI A'CGCG_T Cuts at: 5451 5451 Size: 5575 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4689 4873 1305 Size: 3384 184 2007 Fragments arranged by size: 3384 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3753 Fragments arranged by size: 3753 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3533 3892 4051 518 Size: 648 2367 359 159 2042 Fragments arranged by size: 2367 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2107 2151 2758 2991 3668 4816 5061 1606 Size: 501 44 607 233 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 607 501 245 233 44 NcoI C'CATG_G Cuts at: 513 1065 2248 513 Size: 552 1183 3840 Fragments arranged by size: 3840 1183 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5575 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5575 NotI GC'GGCC_GC Cuts at: 3022 3022 Size: 5575 NspI r_CATG'y Cuts at: 1132 1229 2122 2933 4478 1132 Size: 97 893 811 1545 2229 Fragments arranged by size: 2229 1545 893 811 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5575 PciI A'CATG_T Cuts at: 4474 4474 Size: 5575 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5575 PfoI T'CCnGG_A Cuts at: 2479 2479 Size: 5575 PmeI GTTT'AAAC Cuts at: 2879 2879 Size: 5575 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3644 3676 5157 5189 3644 Size: 32 1481 32 4030 Fragments arranged by size: 4030 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5575 PsiI TTA'TAA Cuts at: 3145 3145 Size: 5575 PspOMI G'GGCC_C Cuts at: 2496 2496 Size: 5575 PstI C_TGCA'G Cuts at: 830 2193 2685 2927 830 Size: 1363 492 242 3478 Fragments arranged by size: 3478 1363 492 242 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5575 PvuII CAG'CTG Cuts at: 2107 2151 2107 Size: 44 5531 SalI G'TCGA_C Cuts at: 1936 2917 1936 Size: 981 4594 SbfI CC_TGCA'GG Cuts at: 2927 2927 Size: 5575 ScaI AGT'ACT Cuts at: 3823 5535 3823 Size: 1712 3863 SfcI C'TryA_G Cuts at: 826 1045 2189 2389 2681 2923 4058 4739 4930 Size: 219 1144 200 292 242 1135 681 191 Cuts at: 4930 826 Size: 1471 Fragments arranged by size: 1471 1144 1135 681 292 242 219 200 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5575 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5575 SmaI CCC'GGG Cuts at: 1872 2902 1872 Size: 1030 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3679 4580 4842 820 Size: 197 926 1736 901 262 1553 Fragments arranged by size: 1736 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3366 493 Size: 2873 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5575 SphI G_CATG'C Cuts at: 1132 2122 2933 1132 Size: 990 811 3774 Fragments arranged by size: 3774 990 811 SspI AAT'ATT Cuts at: 5 52 3499 5 Size: 47 3447 2081 Fragments arranged by size: 3447 2081 47 StuI AGG'CCT Cuts at: 1517 2642 1517 Size: 1125 4450 StyI C'CwwG_G Cuts at: 513 1065 2248 2455 3014 513 Size: 552 1183 207 559 3074 Fragments arranged by size: 3074 1183 559 552 207 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2171 2716 3602 3619 3772 3957 4402 Size: 1255 591 545 886 17 153 185 445 Cuts at: 4402 325 Size: 1498 Fragments arranged by size: 1498 1255 886 591 545 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3821 5533 96 Size: 274 80 33 51 1443 1844 1712 138 Fragments arranged by size: 1844 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2728 2760 5535 5567 2728 Size: 32 2775 32 2736 Fragments arranged by size: 2775 2736 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 2210 1316 Size: 894 4681 XbaI T'CTAG_A Cuts at: 2911 2911 Size: 5575 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2381 2721 2381 Size: 340 5235 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5575 XmaI C'CCGG_G Cuts at: 1870 2900 1870 Size: 1030 4545 XmnI GAAnn'nnTTC Cuts at: 3704 3704 Size: 5575 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2779 3383 276 Size: 53 83 186 936 1245 604 2468 Fragments arranged by size: 2468 1245 936 604 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PspOMI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstZ17I Bsu36I EcoICRI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PpuMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI