Result of FASTA (omim) for
pFN21AE1867
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1867, 290 aa
1>>>pF1KE1867 290 - 290 aa - 290 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7739+/-0.000304; mu= 18.8903+/- 0.019
mean_var=73.0231+/-15.082, 0's: 0 Z-trim(117.7): 92 B-trim: 0 in 0/53
Lambda= 0.150087
statistics sampled from 29787 (29906) to 29787 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.351), width: 16
Scan time: 7.510
The best scores are: opt bits E(85289)
XP_011508436 (OMIM: 188411) PREDICTED: T-cell surf ( 290) 2060 454.8 8.8e-128
NP_001036049 (OMIM: 188411) T-cell surface glycopr ( 290) 2060 454.8 8.8e-128
NP_001036048 (OMIM: 188411) T-cell surface glycopr ( 376) 1874 414.6 1.4e-115
NP_112155 (OMIM: 188411) T-cell surface glycoprote ( 388) 1874 414.7 1.4e-115
NP_001036050 (OMIM: 188411) T-cell surface glycopr ( 321) 1728 383.0 4.1e-106
XP_011508435 (OMIM: 188411) PREDICTED: T-cell surf ( 333) 1728 383.0 4.3e-106
NP_001172043 (OMIM: 188411) T-cell surface glycopr ( 289) 1062 238.7 9.9e-63
NP_001755 (OMIM: 188360) T-cell surface glycoprote ( 333) 1015 228.6 1.3e-59
NP_001754 (OMIM: 188370) T-cell surface glycoprote ( 327) 1013 228.1 1.7e-59
NP_001307581 (OMIM: 188370) T-cell surface glycopr ( 316) 1007 226.8 4.1e-59
NP_001757 (OMIM: 188410) antigen-presenting glycop ( 335) 968 218.4 1.5e-56
XP_011508427 (OMIM: 188410) PREDICTED: antigen-pre ( 335) 968 218.4 1.5e-56
NP_001756 (OMIM: 188340) T-cell surface glycoprote ( 333) 959 216.5 5.7e-56
XP_005245636 (OMIM: 188340) PREDICTED: T-cell surf ( 346) 959 216.5 5.8e-56
XP_011508421 (OMIM: 188360) PREDICTED: T-cell surf ( 278) 905 204.7 1.7e-52
NP_001172037 (OMIM: 188411) T-cell surface glycopr ( 231) 821 186.4 4.3e-47
NP_001172044 (OMIM: 188411) T-cell surface glycopr ( 286) 808 183.7 3.5e-46
NP_001172036 (OMIM: 188411) T-cell surface glycopr ( 298) 808 183.7 3.6e-46
XP_011508429 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 689 157.8 1.7e-38
XP_006711684 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 689 157.8 1.7e-38
XP_005245640 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 689 157.8 1.7e-38
NP_001036052 (OMIM: 188411) T-cell surface glycopr ( 101) 647 148.4 5.2e-36
XP_016858274 (OMIM: 188360) PREDICTED: T-cell surf ( 239) 598 138.2 1.5e-32
XP_016858275 (OMIM: 188360) PREDICTED: T-cell surf ( 220) 596 137.7 1.9e-32
XP_016858273 (OMIM: 188360) PREDICTED: T-cell surf ( 269) 596 137.8 2.2e-32
NP_001306074 (OMIM: 188410) antigen-presenting gly ( 242) 564 130.8 2.5e-30
NP_001036051 (OMIM: 188411) T-cell surface glycopr ( 187) 461 108.4 1.1e-23
NP_001172041 (OMIM: 188411) T-cell surface glycopr ( 199) 461 108.4 1.1e-23
NP_001172039 (OMIM: 188411) T-cell surface glycopr ( 132) 315 76.6 2.8e-14
NP_001172042 (OMIM: 188411) T-cell surface glycopr ( 144) 315 76.7 3e-14
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 231 58.9 1.7e-08
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 231 58.9 1.7e-08
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 215 55.4 1.8e-07
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 204 52.9 7.6e-07
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 196 51.2 2.8e-06
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 185 48.9 1.6e-05
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 184 48.6 1.8e-05
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 181 47.9 2.4e-05
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 174 46.5 8.9e-05
XP_011526798 (OMIM: 600646) PREDICTED: endothelial ( 203) 163 43.9 0.00031
NP_006395 (OMIM: 600646) endothelial protein C rec ( 238) 163 44.0 0.00034
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 164 44.3 0.00038
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 164 44.3 0.00039
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 164 44.4 0.00042
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 164 44.4 0.00044
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 164 44.4 0.00045
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 164 44.4 0.00045
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 164 44.4 0.00046
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 161 43.7 0.00059
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 161 43.7 0.0006
>>XP_011508436 (OMIM: 188411) PREDICTED: T-cell surface (290 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 2415.1 bits: 454.8 E(85289): 8.8e-128
Smith-Waterman score: 2060; 99.7% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
XP_011 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
250 260 270 280 290
>>NP_001036049 (OMIM: 188411) T-cell surface glycoprotei (290 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 2415.1 bits: 454.8 E(85289): 8.8e-128
Smith-Waterman score: 2060; 99.7% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
NP_001 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
250 260 270 280 290
>>NP_001036048 (OMIM: 188411) T-cell surface glycoprotei (376 aa)
initn: 1956 init1: 1874 opt: 1874 Z-score: 2195.9 bits: 414.6 E(85289): 1.4e-115
Smith-Waterman score: 1874; 98.9% identity (100.0% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
NP_001 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
:::::::::::::::::::::::::::..
NP_001 WVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHDLIIH
250 260 270 280 290 300
>>NP_112155 (OMIM: 188411) T-cell surface glycoprotein C (388 aa)
initn: 1956 init1: 1874 opt: 1874 Z-score: 2195.8 bits: 414.7 E(85289): 1.4e-115
Smith-Waterman score: 1874; 98.9% identity (100.0% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
NP_112 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
:::::::::::::::::::::::::::..
NP_112 WVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHDLIIH
250 260 270 280 290 300
>>NP_001036050 (OMIM: 188411) T-cell surface glycoprotei (321 aa)
initn: 1728 init1: 1728 opt: 1728 Z-score: 2026.0 bits: 383.0 E(85289): 4.1e-106
Smith-Waterman score: 1728; 99.6% identity (100.0% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
NP_001 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
:::::::
NP_001 WVMWMRGGYSIFLILICLTVIVTLVILVVVDSRLKKQSPVFLMGANTQDTKNSRHQFCLA
250 260 270 280 290 300
>>XP_011508435 (OMIM: 188411) PREDICTED: T-cell surface (333 aa)
initn: 1728 init1: 1728 opt: 1728 Z-score: 2025.8 bits: 383.0 E(85289): 4.3e-106
Smith-Waterman score: 1728; 99.6% identity (100.0% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
XP_011 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
:::::::
XP_011 WVMWMRGGYSIFLILICLTVIVTLVILVVVDSRLKKQSSNKNILSPHTPSPVFLMGANTQ
250 260 270 280 290 300
>>NP_001172043 (OMIM: 188411) T-cell surface glycoprotei (289 aa)
initn: 1272 init1: 1062 opt: 1062 Z-score: 1247.2 bits: 238.7 E(85289): 9.9e-63
Smith-Waterman score: 1062; 98.7% identity (100.0% similar) in 150 aa overlap (120-269:21-170)
90 100 110 120 130 140
pF1KE1 LKNLQSLFQLYFHSFIRIVQASAGQFQLEYPFEIQILAGCRMNAPQIFLNMAYQGSDFLS
::::::::::::::::::::::::::::::
NP_001 MLLLFLLFEGLCCPGENTADPFEIQILAGCRMNAPQIFLNMAYQGSDFLS
10 20 30 40 50
150 160 170 180 190 200
pF1KE1 FQGISWEPSPGAGIRAQNICKVLNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQGISWEPSPGAGIRAQNICKVLNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRKV
60 70 80 90 100 110
210 220 230 240 250 260
pF1KE1 KPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::..
NP_001 KPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWYL
120 130 140 150 160 170
270 280 290
pF1KE1 FHLSHPDLFDCDSYPGHIGCS
NP_001 RATLDVAAGEAAGLSCRVKHSSLGGHDLIIHWGGYSIFLILICLTVIVTLVILVVVDSRL
180 190 200 210 220 230
>>NP_001755 (OMIM: 188360) T-cell surface glycoprotein C (333 aa)
initn: 1063 init1: 614 opt: 1015 Z-score: 1191.4 bits: 228.6 E(85289): 1.3e-59
Smith-Waterman score: 1015; 54.8% identity (76.8% similar) in 272 aa overlap (1-269:1-263)
10 20 30 40 50 60
pF1KE1 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
:::: . . .. :: :. .:.:. ::...:::::.: .::...:::::
NP_001 MLLLPFQLLAVLFPGGNS--EHAFQG-------PTSFHVIQTSSFTNSTWAQTQGSGWLD
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYP
::: ::::. :: ::::::.:::: .:. .:. .:..:. .: : :: ::.::..::
NP_001 DLQIHGWDSDSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYP
60 70 80 90 100 110
130 140 150 160 170
pF1KE1 FEIQILAGCRMNAPQI---FLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLD
:::: .:::.... :: : : :::: .. : ::: .: :::..: .. .:
NP_001 FEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 IKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYP
: : .. :: .::::.: :...::...:.:.:::::::: ::::::::::::::::::::
NP_001 IMETVRILLYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 KPVWVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
::::::::::::::.::: ::.::::. ::..
NP_001 KPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSSLEGQDI
240 250 260 270 280 290
NP_001 ILYWRNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP
300 310 320 330
>>NP_001754 (OMIM: 188370) T-cell surface glycoprotein C (327 aa)
initn: 1029 init1: 678 opt: 1013 Z-score: 1189.2 bits: 228.1 E(85289): 1.7e-59
Smith-Waterman score: 1013; 54.6% identity (79.0% similar) in 271 aa overlap (3-269:1-262)
10 20 30 40 50
pF1KE1 MLLLFLLFEGLCC-PGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWL
.::::. : ::...: ..:. : :::.. .:: :::: .. ::::
NP_001 MLFLLLPLLAVLPGDGNA--DGLK-------EPLSFHVTWIASFYNHSWKQNLVSGWL
10 20 30 40
60 70 80 90 100 110
pF1KE1 GDLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEY
.::::: ::. .:: :: :::.::::..: :.:..::.. .. .. : ..:.::
NP_001 SDLQTHTWDSNSSTIVFLCPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEY
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE1 PFEIQILAGCRMNAPQI---FLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYL
:::::. .::.... .. ::..:::::::.:::. :: : : :: :...:::::.
NP_001 PFEIQVTGGCELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQ
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE1 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY
..: ..::. :::::. ::..::...:.:.:::::::: :::::::.:::::::::::
NP_001 HENDITHNLLSDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFY
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE1 PKPVWVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
:::::::::::::::.::::::.::.:: ::..
NP_001 PKPVWVMWMRGEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQD
230 240 250 260 270 280
NP_001 IVLYWEHHSSVGFIILAVIVPLLLLIGLALWFRKRCFC
290 300 310 320
>>NP_001307581 (OMIM: 188370) T-cell surface glycoprotei (316 aa)
initn: 1029 init1: 678 opt: 1007 Z-score: 1182.3 bits: 226.8 E(85289): 4.1e-59
Smith-Waterman score: 1007; 57.7% identity (82.2% similar) in 241 aa overlap (32-269:11-251)
10 20 30 40 50 60
pF1KE1 LLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLGD
.: :::.. .:: :::: .. ::::.:
NP_001 MFAFGGATGLKEPLSFHVTWIASFYNHSWKQNLVSGWLSD
10 20 30 40
70 80 90 100 110 120
pF1KE1 LQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLEYPF
:::: ::. .:: :: :::.::::..: :.:..::.. .. .. : ..:.::::
NP_001 LQTHTWDSNSSTIVFLCPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPF
50 60 70 80 90 100
130 140 150 160 170
pF1KE1 EIQILAGCRMNAPQI---FLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDI
:::. .::.... .. ::..:::::::.:::. :: : : :: :...:::::.
NP_001 EIQVTGGCELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHE
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE1 KEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPK
..: ..::. :::::. ::..::...:.:.:::::::: :::::::.:::::::::::::
NP_001 NDITHNLLSDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPK
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE1 PVWVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
:::::::::::::.::::::.::.:: ::..
NP_001 PVWVMWMRGEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIV
230 240 250 260 270 280
NP_001 LYWEHHSSVGFIILAVIVPLLLLIGLALWFRKRCFC
290 300 310
290 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 11:09:20 2016 done: Sun Nov 6 11:09:21 2016
Total Scan time: 7.510 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]