FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1778, 285 aa
  1>>>pF1KE1778 285 - 285 aa - 285 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5150+/-0.0009; mu= 13.3965+/- 0.054
 mean_var=56.2571+/-11.269, 0's: 0 Z-trim(104.2): 32  B-trim: 3 in 1/48
 Lambda= 0.170996
 statistics sampled from 7758 (7769) to 7758 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.239), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS41358.1 DPH5 gene_id:51611|Hs108|chr1          ( 285) 1851 464.8 3.1e-131
CCDS41359.1 DPH5 gene_id:51611|Hs108|chr1          ( 284) 1834 460.7 5.6e-130


>>CCDS41358.1 DPH5 gene_id:51611|Hs108|chr1               (285 aa)
 initn: 1851 init1: 1851 opt: 1851  Z-score: 2469.6  bits: 464.8 E(32554): 3.1e-131
Smith-Waterman score: 1851; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)

               10        20        30        40        50        60
pF1KE1 MLYLIGLGLGDAKDITVKGLEVVRRCSRVYLEAYTSVLTVGKEALEEFYGRKLVVADREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLYLIGLGLGDAKDITVKGLEVVRRCSRVYLEAYTSVLTVGKEALEEFYGRKLVVADREE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VEQEADNILKDADISDVAFLVVGDPFGATTHSDLVLRATKLGIPYRVIHNASIMNAVGCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VEQEADNILKDADISDVAFLVVGDPFGATTHSDLVLRATKLGIPYRVIHNASIMNAVGCC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GLQLYKFGETVSIVFWTDTWRPESFFDKVKKNRQNGMHTLCLLDIKVKEQSLENLIKGRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GLQLYKFGETVSIVFWTDTWRPESFFDKVKKNRQNGMHTLCLLDIKVKEQSLENLIKGRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 IYEPPRYMSVNQAAQQLLEIVQNQRIRGEEPAVTEETLCVGLARVGADDQKIAAGTLRQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IYEPPRYMSVNQAAQQLLEIVQNQRIRGEEPAVTEETLCVGLARVGADDQKIAAGTLRQM
              190       200       210       220       230       240

              250       260       270       280     
pF1KE1 CTVDLGEPLHSLIITGGSIHPMEMEMLSLFSIPENSSESQSINGL
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CTVDLGEPLHSLIITGGSIHPMEMEMLSLFSIPENSSESQSINGL
              250       260       270       280     

>>CCDS41359.1 DPH5 gene_id:51611|Hs108|chr1               (284 aa)
 initn: 1382 init1: 1382 opt: 1834  Z-score: 2447.0  bits: 460.7 E(32554): 5.6e-130
Smith-Waterman score: 1834; 99.6% identity (99.6% similar) in 285 aa overlap (1-285:1-284)

               10        20        30        40        50        60
pF1KE1 MLYLIGLGLGDAKDITVKGLEVVRRCSRVYLEAYTSVLTVGKEALEEFYGRKLVVADREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLYLIGLGLGDAKDITVKGLEVVRRCSRVYLEAYTSVLTVGKEALEEFYGRKLVVADREE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VEQEADNILKDADISDVAFLVVGDPFGATTHSDLVLRATKLGIPYRVIHNASIMNAVGCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VEQEADNILKDADISDVAFLVVGDPFGATTHSDLVLRATKLGIPYRVIHNASIMNAVGCC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GLQLYKFGETVSIVFWTDTWRPESFFDKVKKNRQNGMHTLCLLDIKVKEQSLENLIKGRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GLQLYKFGETVSIVFWTDTWRPESFFDKVKKNRQNGMHTLCLLDIKVKEQSLENLIKGRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 IYEPPRYMSVNQAAQQLLEIVQNQRIRGEEPAVTEETLCVGLARVGADDQKIAAGTLRQM
       ::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
CCDS41 IYEPPRYMSVNQAAQQLLEIVQNQRIRGEEP-VTEETLCVGLARVGADDQKIAAGTLRQM
              190       200       210        220       230         

              250       260       270       280     
pF1KE1 CTVDLGEPLHSLIITGGSIHPMEMEMLSLFSIPENSSESQSINGL
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CTVDLGEPLHSLIITGGSIHPMEMEMLSLFSIPENSSESQSINGL
     240       250       260       270       280    




285 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:10:33 2016 done: Sun Nov  6 11:10:34 2016
 Total Scan time:  1.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]