FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6265, 690 aa 1>>>pF1KB6265 690 - 690 aa - 690 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6533+/-0.000989; mu= 14.5895+/- 0.060 mean_var=110.7151+/-22.176, 0's: 0 Z-trim(107.6): 28 B-trim: 0 in 0/52 Lambda= 0.121891 statistics sampled from 9654 (9670) to 9654 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.297), width: 16 Scan time: 3.970 The best scores are: opt bits E(32554) CCDS35342.1 HDX gene_id:139324|Hs108|chrX ( 690) 4538 809.2 0 CCDS55456.1 HDX gene_id:139324|Hs108|chrX ( 632) 4151 741.2 1.1e-213 >>CCDS35342.1 HDX gene_id:139324|Hs108|chrX (690 aa) initn: 4538 init1: 4538 opt: 4538 Z-score: 4317.1 bits: 809.2 E(32554): 0 Smith-Waterman score: 4538; 100.0% identity (100.0% similar) in 690 aa overlap (1-690:1-690) 10 20 30 40 50 60 pF1KB6 MNLRSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLDFSVVRTWVGNKRRKMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 MNLRSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLDFSVVRTWVGNKRRKMS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 SKNSESGTATTGTSLSAPDITVRNVVNIARPSSQQSSWTSANNDVIVTGIYSPASSSSRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 SKNSESGTATTGTSLSAPDITVRNVVNIARPSSQQSSWTSANNDVIVTGIYSPASSSSRQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 GTNKHTDTQITEAHKIPIQKTATKNDTEFQLHIPVQRQVAHCKNASLLLGEKTIILSRQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 GTNKHTDTQITEAHKIPIQKTATKNDTEFQLHIPVQRQVAHCKNASLLLGEKTIILSRQT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 SVLNAGNSVFNHAKKNYGNSSVQASEMTVPQKPSVCHRPCKIEPVGIQRSYKPEHTGPAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 SVLNAGNSVFNHAKKNYGNSSVQASEMTVPQKPSVCHRPCKIEPVGIQRSYKPEHTGPAL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB6 HNLCGQKPTIRDPYCRTQNLEIREVFSLAVSDYPQRILGGNAPQKPSSAEGNCLSIAMET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 HNLCGQKPTIRDPYCRTQNLEIREVFSLAVSDYPQRILGGNAPQKPSSAEGNCLSIAMET 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB6 GDAEDEYAREEELASMRAQIPSYSRFYESGSSLRAENQSTTLPGPGRNMPNSQMVNIRDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 GDAEDEYAREEELASMRAQIPSYSRFYESGSSLRAENQSTTLPGPGRNMPNSQMVNIRDM 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB6 SDNVLYQNRNYHLTPRTSLHTASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 SDNVLYQNRNYHLTPRTSLHTASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB6 NLTVPWITGCSRKRALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 NLTVPWITGCSRKRALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDC 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB6 EIVRTWIGNRRRKYRLMGIEVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 EIVRTWIGNRRRKYRLMGIEVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRN 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB6 DEVSICLSEGSSQEEPNEVVPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 DEVSICLSEGSSQEEPNEVVPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQ 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB6 VNSFLDYKNEEVKFIENELEIQKQKYFKLQTFVRSLILAMKADDKEQQQALLSDLPPELE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 VNSFLDYKNEEVKFIENELEIQKQKYFKLQTFVRSLILAMKADDKEQQQALLSDLPPELE 610 620 630 640 650 660 670 680 690 pF1KB6 EMDFNHASLEPDDTSFSVSSLSEKNVSESL :::::::::::::::::::::::::::::: CCDS35 EMDFNHASLEPDDTSFSVSSLSEKNVSESL 670 680 690 >>CCDS55456.1 HDX gene_id:139324|Hs108|chrX (632 aa) initn: 4151 init1: 4151 opt: 4151 Z-score: 3949.8 bits: 741.2 E(32554): 1.1e-213 Smith-Waterman score: 4151; 100.0% identity (100.0% similar) in 632 aa overlap (59-690:1-632) 30 40 50 60 70 80 pF1KB6 NCFQLILQCAQETKLDFSVVRTWVGNKRRKMSSKNSESGTATTGTSLSAPDITVRNVVNI :::::::::::::::::::::::::::::: CCDS55 MSSKNSESGTATTGTSLSAPDITVRNVVNI 10 20 30 90 100 110 120 130 140 pF1KB6 ARPSSQQSSWTSANNDVIVTGIYSPASSSSRQGTNKHTDTQITEAHKIPIQKTATKNDTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 ARPSSQQSSWTSANNDVIVTGIYSPASSSSRQGTNKHTDTQITEAHKIPIQKTATKNDTE 40 50 60 70 80 90 150 160 170 180 190 200 pF1KB6 FQLHIPVQRQVAHCKNASLLLGEKTIILSRQTSVLNAGNSVFNHAKKNYGNSSVQASEMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 FQLHIPVQRQVAHCKNASLLLGEKTIILSRQTSVLNAGNSVFNHAKKNYGNSSVQASEMT 100 110 120 130 140 150 210 220 230 240 250 260 pF1KB6 VPQKPSVCHRPCKIEPVGIQRSYKPEHTGPALHNLCGQKPTIRDPYCRTQNLEIREVFSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VPQKPSVCHRPCKIEPVGIQRSYKPEHTGPALHNLCGQKPTIRDPYCRTQNLEIREVFSL 160 170 180 190 200 210 270 280 290 300 310 320 pF1KB6 AVSDYPQRILGGNAPQKPSSAEGNCLSIAMETGDAEDEYAREEELASMRAQIPSYSRFYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 AVSDYPQRILGGNAPQKPSSAEGNCLSIAMETGDAEDEYAREEELASMRAQIPSYSRFYE 220 230 240 250 260 270 330 340 350 360 370 380 pF1KB6 SGSSLRAENQSTTLPGPGRNMPNSQMVNIRDMSDNVLYQNRNYHLTPRTSLHTASSTMYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 SGSSLRAENQSTTLPGPGRNMPNSQMVNIRDMSDNVLYQNRNYHLTPRTSLHTASSTMYS 280 290 300 310 320 330 390 400 410 420 430 440 pF1KB6 NTNPLRSNFSPHFASSNQLRLSQNQNNYQISGNLTVPWITGCSRKRALQDRTQFSDRDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 NTNPLRSNFSPHFASSNQLRLSQNQNNYQISGNLTVPWITGCSRKRALQDRTQFSDRDLA 340 350 360 370 380 390 450 460 470 480 490 500 pF1KB6 TLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIEVPPPRGGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 TLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIEVPPPRGGP 400 410 420 430 440 450 510 520 530 540 550 560 pF1KB6 ADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEVVPNDARAHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 ADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEVVPNDARAHK 460 470 480 490 500 510 570 580 590 600 610 620 pF1KB6 EEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIENELEIQKQKYFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 EEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIENELEIQKQKYFK 520 530 540 550 560 570 630 640 650 660 670 680 pF1KB6 LQTFVRSLILAMKADDKEQQQALLSDLPPELEEMDFNHASLEPDDTSFSVSSLSEKNVSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 LQTFVRSLILAMKADDKEQQQALLSDLPPELEEMDFNHASLEPDDTSFSVSSLSEKNVSE 580 590 600 610 620 630 690 pF1KB6 SL :: CCDS55 SL 690 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:08:26 2016 done: Sun Nov 6 03:08:27 2016 Total Scan time: 3.970 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]