FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5016, 334 aa 1>>>pF1KE5016 334 - 334 aa - 334 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6422+/-0.000731; mu= 12.7620+/- 0.044 mean_var=160.5121+/-32.650, 0's: 0 Z-trim(116.1): 153 B-trim: 10 in 1/51 Lambda= 0.101233 statistics sampled from 16522 (16699) to 16522 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.513), width: 16 Scan time: 3.380 The best scores are: opt bits E(32554) CCDS35184.1 LRRC26 gene_id:389816|Hs108|chr9 ( 334) 2286 344.9 5.3e-95 CCDS53269.1 LRRC38 gene_id:126755|Hs108|chr1 ( 294) 464 78.8 6.2e-15 CCDS31539.1 LRRC55 gene_id:219527|Hs108|chr11 ( 341) 453 77.2 2.1e-14 CCDS7453.1 SLIT1 gene_id:6585|Hs108|chr10 (1534) 419 73.0 1.8e-12 CCDS10259.1 ISLR2 gene_id:57611|Hs108|chr15 ( 745) 399 69.7 8.4e-12 CCDS31726.1 LRTM2 gene_id:654429|Hs108|chr12 ( 370) 390 68.1 1.3e-11 >>CCDS35184.1 LRRC26 gene_id:389816|Hs108|chr9 (334 aa) initn: 2286 init1: 2286 opt: 2286 Z-score: 1819.0 bits: 344.9 E(32554): 5.3e-95 Smith-Waterman score: 2286; 99.4% identity (99.7% similar) in 334 aa overlap (1-334:1-334) 10 20 30 40 50 60 pF1KE5 MRGPSWLRPRPLLLLLLLLSPWPVWAHVSATASPSGSLGAPDCPEVCTCVPGGLASCSAL :::::: :::::::::::::::::::.::::::::::::::::::::::::::::::::: CCDS35 MRGPSWSRPRPLLLLLLLLSPWPVWAQVSATASPSGSLGAPDCPEVCTCVPGGLASCSAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SLPAVPPGLSLRLRALLLDHNRVRALPPGAFAGAGALQRLDLRENGLHSVHVRAFWGLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 SLPAVPPGLSLRLRALLLDHNRVRALPPGAFAGAGALQRLDLRENGLHSVHVRAFWGLGA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LQLLDLSANQLEALAPGTFAPLRALRNLSLAGNRLARLEPAALGALPLLRSLSLQDNELA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 LQLLDLSANQLEALAPGTFAPLRALRNLSLAGNRLARLEPAALGALPLLRSLSLQDNELA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 ALAPGLLGRLPALDALHLRGNPWGCGCALRPLCAWLRRHPLPASEAETVLCVWPGRLTLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 ALAPGLLGRLPALDALHLRGNPWGCGCALRPLCAWLRRHPLPASEAETVLCVWPGRLTLS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 PLTAFSDAAFSHCAQPLALRDLAVVYTLGPASFLVSLASCLALGSGLTACRARRRRLRTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 PLTAFSDAAFSHCAQPLALRDLAVVYTLGPASFLVSLASCLALGSGLTACRARRRRLRTA 250 260 270 280 290 300 310 320 330 pF1KE5 ALRPPRPPDPNPDPDPHGCASPADPGSPAAAAQA :::::::::::::::::::::::::::::::::: CCDS35 ALRPPRPPDPNPDPDPHGCASPADPGSPAAAAQA 310 320 330 >>CCDS53269.1 LRRC38 gene_id:126755|Hs108|chr1 (294 aa) initn: 547 init1: 368 opt: 464 Z-score: 381.6 bits: 78.8 E(32554): 6.2e-15 Smith-Waterman score: 464; 35.4% identity (60.4% similar) in 260 aa overlap (38-293:21-278) 10 20 30 40 50 60 pF1KE5 RPRPLLLLLLLLSPWPVWAHVSATASPSGSLGAPD--CPEVCTCVPGGLASCSALSLPAV : :: :: :.:. ..: .::.: CCDS53 MRPRAPACAAAALGLCSLLLLLAPGHACPAGCACTDPHTVDCRDRGLPSV 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 PPGLSLRLRALLLDHNRVRALPPGAFAGAGALQRLDLRENGLHSVHVRAFWGLGALQLLD : . : .: ::. ::.. .: : : : ::.:.:.:.:.. .: : . : .:: CCDS53 PDPFPLDVRKLLVAGNRIQRIPEDFFIFYGDLVYLDFRNNSLRSLEEGTFSGSAKLVFLD 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 LSANQLEALAPGTFAPLRALRNLSLAGNRLARLEPAALGALPLLRSLSLQDNELAALAPG :: :.: :. :.: : .::::.: :. .. :. .: :. : :.::.: .:. . CCDS53 LSYNNLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFETLESLQVLELNDNNLRSLSVA 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE5 LLGRLPALDALHLRGNPWGCGCALRPLCAWLRRHP--LPASEAETVLCVWPGRLTLSPLT :. :::: .:.: :::: : : . : .:.... :: . : . : : . : CCDS53 ALAALPALRSLRLDGNPWLCDCDFAHLFSWIQENASKLPKGLDE-IQCSLPMESRRISLR 180 190 200 210 220 250 260 270 280 290 300 pF1KE5 AFSDAAFSHCAQPLALRDLAVVYTLGPASFLVSLASCLALGSGLTACRARRRRLRTAALR .:.:.::.: :.: :: .. : : .... : . :.. .. : : CCDS53 ELSEASFSECRFSLSLTDLCIIIFSGVAVSIAAIISSFFLAT-VVQCLQRCAPNKDAEDE 230 240 250 260 270 280 310 320 330 pF1KE5 PPRPPDPNPDPDPHGCASPADPGSPAAAAQA CCDS53 DEDKDD 290 >>CCDS31539.1 LRRC55 gene_id:219527|Hs108|chr11 (341 aa) initn: 355 init1: 179 opt: 453 Z-score: 372.1 bits: 77.2 E(32554): 2.1e-14 Smith-Waterman score: 455; 32.4% identity (57.4% similar) in 296 aa overlap (3-290:45-329) 10 20 pF1KE5 MRGPSWLR------PRPLLLLLLLLSPWPVWA : .: . :.: .::. :: . CCDS31 SCLPVSQTLDSMDTVLMGSLQHCCCLLPKMGDTWAQLPWPGPPHPAMLLISLLLAAGLM- 20 30 40 50 60 70 30 40 50 60 70 80 pF1KE5 HVSATASPSGSLGAPDCPEVCTCVPGGLASCSALSLPAVPPGLSLRLRALLLDHNRVRAL : .: .: :: .::: . ...::. : .::: : . : : : :::. :. CCDS31 HSDAGTS---------CPVLCTCR-NQVVDCSSQRLFSVPPDLPMDTRNLSLAHNRITAV 80 90 100 110 120 90 100 110 120 130 140 pF1KE5 PPGAFAGAGALQRLDLRENGLHSVHVRAFWGLGALQLLDLSANQLEALAPGTFAPLRALR ::: .. :: :::..:.: . : : :::: :.. . : ..: CCDS31 PPGYLTCYMELQVLDLHNNSLMELPRGLFLHAKRLAHLDLSYNNFSHVPADMFQEAHGLV 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE5 NLSLAGNR-LARLEPAALGALPLLRSLSLQDNELAALAPGLLGRLPALDALHLRGNPWGC ...:. : : :..: :. .: ::.:.:. . :: :. : ::.: .:.. :::: : CCDS31 HIDLSHNPWLRRVHPQAFQGLMQLRDLDLSYGGLAFLSLEALEGLPGLVTLQIGGNPWVC 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE5 GCALRPLCAWLR-RHPLPASEAETVLCVWPGRLTLSPLTAFSDAAFSHCAQPLALRDLAV ::...:: ::: : ..... . : : .. .:: .... .:. : :.: : CCDS31 GCTMEPLLKWLRNRIQRCTADSQLAECRGPPEVEGAPLFSLTEESFKACHLTLTLDDYLF 250 260 270 280 290 300 270 280 290 300 310 320 pF1KE5 VYTLGPASFLVSLASCLALGSGLTACRARRRRLRTAALRPPRPPDPNPDPDPHGCASPAD . .: . ..:.:. . :: . : CCDS31 IAFVGFVVSIASVATNFLLGITANCCHRWSKASEEEEI 310 320 330 340 >>CCDS7453.1 SLIT1 gene_id:6585|Hs108|chr10 (1534 aa) initn: 1205 init1: 292 opt: 419 Z-score: 337.4 bits: 73.0 E(32554): 1.8e-12 Smith-Waterman score: 419; 35.8% identity (63.7% similar) in 204 aa overlap (34-237:273-472) 10 20 30 40 50 60 pF1KE5 PSWLRPRPLLLLLLLLSPWPVWAHVSATASPSGSLGAPDCPEVCTCVPGGLASCSALSLP :. .:.. .:: .::: .:...: . .: CCDS74 SGPASLRGLNVAEVQKSEFSCSGQGEAGRVPTCTLSSGSCPAMCTC-SNGIVDCRGKGLT 250 260 270 280 290 300 70 80 90 100 110 120 pF1KE5 AVPPGLSLRLRALLLDHNRVRALPPGAFAGAGALQRLDLRENGLHSVHVRAFWGLGALQL :.: .: . . :. : ....:::::. :.:.:: .: . . :: :: .:. CCDS74 AIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLNS 310 320 330 340 350 360 130 140 150 160 170 180 pF1KE5 LDLSANQLEALAPGTFAPLRALRNLSLAGNRLARLEPAALGALPLLRSLSLQDNELAALA : : .:.. : :.:. : .:. : : .:.. ..: :. : : ::: ::.. .:: CCDS74 LVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSLA 370 380 390 400 410 420 190 200 210 220 230 240 pF1KE5 PGLLGRLPALDALHLRGNPWGCGCALRPLCAWLRRHPLPASEAETVLCVWPGRLTLSPLT : . : :...::: ::. : : :. : .:: .:. .: :. :. : :: CCDS74 KGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETSGAR---CASPRRLANKRIG 430 440 450 460 470 250 260 270 280 290 300 pF1KE5 AFSDAAFSHCAQPLALRDLAVVYTLGPASFLVSLASCLALGSGLTACRARRRRLRTAALR CCDS74 QIKSKKFRCSAKEQYFIPGTEDYQLNSECNSDVVCPHKCRCEANVVECSSLKLTKIPERI 480 490 500 510 520 530 >>CCDS10259.1 ISLR2 gene_id:57611|Hs108|chr15 (745 aa) initn: 411 init1: 334 opt: 399 Z-score: 325.4 bits: 69.7 E(32554): 8.4e-12 Smith-Waterman score: 399; 35.7% identity (57.6% similar) in 238 aa overlap (22-256:8-233) 10 20 30 40 50 pF1KE5 MRGPSWLRPRPLLLLLLLLSPWPVWAHVSATASPSGSLGAPDCPEVCTCVPG---GLASC : ::: .....: ::: :.:: .:.: CCDS10 MFPLRALWLVWALLGVAGS---------CPEPCACVDKYAHQFADC 10 20 30 60 70 80 90 100 110 pF1KE5 SALSLPAVPPGLSLRLRALLLDHNRVRALPPGAFAGAGALQRLDLRENGLHSVHVRAFWG . : :: :: . .: :. :.. .: :::: . . : : .: ...:. :. CCDS10 AYKELREVPEGLPANVTTLSLSANKITVLRRGAFADVTQVTSLWLAHNEVRTVEPGALAV 40 50 60 70 80 90 120 130 140 150 160 170 pF1KE5 LGALQLLDLSANQLEALAPGTFAPLRALRNLSLAGNRLARLEPAALGALPLLRSLSLQDN :. :. :::: : . .. . . : ::. :.. :::. : :::::: :::: ...: CCDS10 LSQLKNLDLSHNFISSFPWSDLRNLSALQLLKMNHNRLGSLPRDALGALPDLRSLRINNN 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE5 ELAALAPGLLGRLPALDALHLRGNPWGCGCALRPLCAWLRRHPLPASEAETVLCVWPGRL .: .:::: . : ::. :.: ::. :::.: : :: . : ... :. : : CCDS10 RLRTLAPGTFDALSALSHLQLYHNPFHCGCGLVWLQAWAASTRVSLPEPDSIACASPPAL 160 170 180 190 200 210 240 250 260 270 280 290 pF1KE5 TLSPLTAFSDAAFSHCAQPLALRDLAVVYTLGPASFLVSLASCLALGSGLTACRARRRRL :. . :. :: : CCDS10 QGVPV--YRLPALP-CAPPSVHLSAEPPLEAPGTPLRAGLAFVLHCIADGHPTPRLQWQL 220 230 240 250 260 270 >>CCDS31726.1 LRTM2 gene_id:654429|Hs108|chr12 (370 aa) initn: 353 init1: 353 opt: 390 Z-score: 322.0 bits: 68.1 E(32554): 1.3e-11 Smith-Waterman score: 390; 34.7% identity (58.3% similar) in 216 aa overlap (41-255:37-252) 20 30 40 50 60 pF1KE5 PLLLLLLLLSPWPVWAHVSATASPSGSLGAPDCPEVCTCVPGGL-ASCSALSLPAVPPGL : :: : : .: ..::.:.: .::: . CCDS31 SPGQRGRLALQWRQVSWITCWIALYAVEALPTCPFSCKCDSRSLEVDCSGLGLTTVPPDV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SLRLRALLLDHNRVRALPPGAFAGAGALQRLDLRENGLHSVHVRAFWGLGALQLLDLSAN :.::: .:.. ::: :::. ..:::::: .: : . : : : :.: : CCDS31 PAATRTLLLLNNKLSALPSWAFANLSSLQRLDLSNNFLDRLPRSIFGDLTNLTELQLRNN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 QLEALAPGTFAPLRALRNLSLAGNRLARLEPAALGALPLLRSLSLQDNELAALAPGLLGR ....: . ::.:.:. : ::.: :. . .: ::::::..:.: : . CCDS31 SIRTLDRDLLRHSPLLRHLDLSINGLAQLPPGLFDGLLALRSLSLRSNRLQNLDRLTFEP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 LPALDALHLRGNPWGCGCALRPLCAWLRRHPLPASEAETVLCVWPGRLTLSPLTAFSDAA : :. :.. ::: : : :: . :.. ... . . :. : .: . . CCDS31 LANLQLLQVGDNPWECDCNLREFKHWMEWFSYRGGRLDQLACTLPKELRGKDMRMVPMEM 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 FSHCAQPLALRDLAVVYTLGPASFLVSLASCLALGSGLTACRARRRRLRTAALRPPRPPD :..:.: CCDS31 FNYCSQLEDENSSAGLDIPGPPCTKASPEPAKPKPGAEPEPEPSTACPQKQRHRPASVRR 250 260 270 280 290 300 334 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:11:13 2016 done: Tue Nov 8 04:11:14 2016 Total Scan time: 3.380 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]