FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1717, 223 aa 1>>>pF1KE1717 223 - 223 aa - 223 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6547+/-0.000318; mu= 17.4605+/- 0.020 mean_var=59.4324+/-12.025, 0's: 0 Z-trim(114.9): 19 B-trim: 0 in 0/58 Lambda= 0.166365 statistics sampled from 24927 (24946) to 24927 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.292), width: 16 Scan time: 6.250 The best scores are: opt bits E(85289) NP_001273727 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 223) 1513 371.1 8.1e-103 NP_001273726 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 223) 1513 371.1 8.1e-103 NP_001273725 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 223) 1513 371.1 8.1e-103 NP_054783 (OMIM: 613560) N-terminal Xaa-Pro-Lys N- ( 223) 1513 371.1 8.1e-103 NP_001273728 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 223) 1513 371.1 8.1e-103 NP_001273732 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 135) 921 228.9 3.3e-60 XP_005251996 (OMIM: 613560) PREDICTED: N-terminal ( 135) 921 228.9 3.3e-60 XP_016870131 (OMIM: 613560) PREDICTED: N-terminal ( 135) 921 228.9 3.3e-60 NP_001273731 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 135) 921 228.9 3.3e-60 NP_001273730 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 145) 731 183.3 1.8e-46 NP_001273729 (OMIM: 613560) N-terminal Xaa-Pro-Lys ( 145) 731 183.3 1.8e-46 >>NP_001273727 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (223 aa) initn: 1513 init1: 1513 opt: 1513 Z-score: 1966.9 bits: 371.1 E(85289): 8.1e-103 Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223) 10 20 30 40 50 60 pF1KE1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD 130 140 150 160 170 180 190 200 210 220 pF1KE1 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR ::::::::::::::::::::::::::::::::::::::::::: NP_001 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 190 200 210 220 >>NP_001273726 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (223 aa) initn: 1513 init1: 1513 opt: 1513 Z-score: 1966.9 bits: 371.1 E(85289): 8.1e-103 Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223) 10 20 30 40 50 60 pF1KE1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD 130 140 150 160 170 180 190 200 210 220 pF1KE1 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR ::::::::::::::::::::::::::::::::::::::::::: NP_001 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 190 200 210 220 >>NP_001273725 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (223 aa) initn: 1513 init1: 1513 opt: 1513 Z-score: 1966.9 bits: 371.1 E(85289): 8.1e-103 Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223) 10 20 30 40 50 60 pF1KE1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD 130 140 150 160 170 180 190 200 210 220 pF1KE1 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR ::::::::::::::::::::::::::::::::::::::::::: NP_001 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 190 200 210 220 >>NP_054783 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-meth (223 aa) initn: 1513 init1: 1513 opt: 1513 Z-score: 1966.9 bits: 371.1 E(85289): 8.1e-103 Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223) 10 20 30 40 50 60 pF1KE1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD 130 140 150 160 170 180 190 200 210 220 pF1KE1 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR ::::::::::::::::::::::::::::::::::::::::::: NP_054 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 190 200 210 220 >>NP_001273728 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (223 aa) initn: 1513 init1: 1513 opt: 1513 Z-score: 1966.9 bits: 371.1 E(85289): 8.1e-103 Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223) 10 20 30 40 50 60 pF1KE1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD 130 140 150 160 170 180 190 200 210 220 pF1KE1 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR ::::::::::::::::::::::::::::::::::::::::::: NP_001 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 190 200 210 220 >>NP_001273732 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (135 aa) initn: 921 init1: 921 opt: 921 Z-score: 1202.0 bits: 228.9 E(85289): 3.3e-60 Smith-Waterman score: 921; 100.0% identity (100.0% similar) in 135 aa overlap (89-223:1-135) 60 70 80 90 100 110 pF1KE1 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG :::::::::::::::::::::::::::::: NP_001 MVDITEDFLVQAKTYLGEEGKRVRNYFCCG 10 20 30 120 130 140 150 160 170 pF1KE1 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD 40 50 60 70 80 90 180 190 200 210 220 pF1KE1 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR ::::::::::::::::::::::::::::::::::::::::::::: NP_001 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 100 110 120 130 >>XP_005251996 (OMIM: 613560) PREDICTED: N-terminal Xaa- (135 aa) initn: 921 init1: 921 opt: 921 Z-score: 1202.0 bits: 228.9 E(85289): 3.3e-60 Smith-Waterman score: 921; 100.0% identity (100.0% similar) in 135 aa overlap (89-223:1-135) 60 70 80 90 100 110 pF1KE1 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG :::::::::::::::::::::::::::::: XP_005 MVDITEDFLVQAKTYLGEEGKRVRNYFCCG 10 20 30 120 130 140 150 160 170 pF1KE1 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD 40 50 60 70 80 90 180 190 200 210 220 pF1KE1 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR ::::::::::::::::::::::::::::::::::::::::::::: XP_005 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 100 110 120 130 >>XP_016870131 (OMIM: 613560) PREDICTED: N-terminal Xaa- (135 aa) initn: 921 init1: 921 opt: 921 Z-score: 1202.0 bits: 228.9 E(85289): 3.3e-60 Smith-Waterman score: 921; 100.0% identity (100.0% similar) in 135 aa overlap (89-223:1-135) 60 70 80 90 100 110 pF1KE1 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG :::::::::::::::::::::::::::::: XP_016 MVDITEDFLVQAKTYLGEEGKRVRNYFCCG 10 20 30 120 130 140 150 160 170 pF1KE1 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD 40 50 60 70 80 90 180 190 200 210 220 pF1KE1 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR ::::::::::::::::::::::::::::::::::::::::::::: XP_016 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 100 110 120 130 >>NP_001273731 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (135 aa) initn: 921 init1: 921 opt: 921 Z-score: 1202.0 bits: 228.9 E(85289): 3.3e-60 Smith-Waterman score: 921; 100.0% identity (100.0% similar) in 135 aa overlap (89-223:1-135) 60 70 80 90 100 110 pF1KE1 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG :::::::::::::::::::::::::::::: NP_001 MVDITEDFLVQAKTYLGEEGKRVRNYFCCG 10 20 30 120 130 140 150 160 170 pF1KE1 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD 40 50 60 70 80 90 180 190 200 210 220 pF1KE1 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR ::::::::::::::::::::::::::::::::::::::::::::: NP_001 VDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 100 110 120 130 >>NP_001273730 (OMIM: 613560) N-terminal Xaa-Pro-Lys N-m (145 aa) initn: 731 init1: 731 opt: 731 Z-score: 955.1 bits: 183.3 E(85289): 1.8e-46 Smith-Waterman score: 731; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110) 10 20 30 40 50 60 pF1KE1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRATSPISTWPS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD NP_001 SCGAARAASAPTASSSSKTTWPRRA 130 140 223 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 11:15:01 2016 done: Sun Nov 6 11:15:02 2016 Total Scan time: 6.250 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]