Result of FASTA (ccds) for
pFN21AE2643
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2643, 105 aa
1>>>pF1KE2643 105 - 105 aa - 105 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5093+/-0.000679; mu= 13.7312+/- 0.041
mean_var=54.2285+/-10.783, 0's: 0 Z-trim(109.0): 46 B-trim: 0 in 0/51
Lambda= 0.174165
statistics sampled from 10527 (10573) to 10527 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.325), width: 16
Scan time: 1.130
The best scores are: opt bits E(32554)
CCDS35103.1 TXN gene_id:7295|Hs108|chr9 ( 105) 705 184.3 1.2e-47
CCDS11846.1 TXNDC2 gene_id:84203|Hs108|chr18 ( 486) 450 120.7 7.7e-28
CCDS42414.1 TXNDC2 gene_id:84203|Hs108|chr18 ( 553) 450 120.7 8.5e-28
CCDS35104.1 TXNDC8 gene_id:255220|Hs108|chr9 ( 115) 310 85.1 9.6e-18
CCDS59139.1 TXN gene_id:7295|Hs108|chr9 ( 85) 300 82.5 4.3e-17
CCDS11961.1 TXNL1 gene_id:9352|Hs108|chr18 ( 289) 284 78.8 1.8e-15
CCDS13928.1 TXN2 gene_id:25828|Hs108|chr22 ( 166) 229 64.8 1.7e-11
>>CCDS35103.1 TXN gene_id:7295|Hs108|chr9 (105 aa)
initn: 705 init1: 705 opt: 705 Z-score: 969.0 bits: 184.3 E(32554): 1.2e-47
Smith-Waterman score: 705; 100.0% identity (100.0% similar) in 105 aa overlap (1-105:1-105)
10 20 30 40 50 60
pF1KE2 MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD
10 20 30 40 50 60
70 80 90 100
pF1KE2 DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELV
:::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELV
70 80 90 100
>>CCDS11846.1 TXNDC2 gene_id:84203|Hs108|chr18 (486 aa)
initn: 450 init1: 450 opt: 450 Z-score: 613.3 bits: 120.7 E(32554): 7.7e-28
Smith-Waterman score: 450; 61.2% identity (82.5% similar) in 103 aa overlap (2-104:383-485)
10 20 30
pF1KE2 MVKQIESKTAFQEALDAAGDKLVVVDFSATW
:: : :: :. .: ::..::.:::::::
CCDS11 PKSLEEATPSKEGDILKPEEETMEFPEGDKVKVILSKEDFEASLKEAGERLVAVDFSATW
360 370 380 390 400 410
40 50 60 70 80 90
pF1KE2 CGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSG
::::. :.::::.:: :. .:.:::::.:.:..:. :: . :.:::::.:: .:: :. :
CCDS11 CGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCG
420 430 440 450 460 470
100
pF1KE2 ANKEKLEATINELV
: ::::::.: ::
CCDS11 ALKEKLEAVIAELK
480
>>CCDS42414.1 TXNDC2 gene_id:84203|Hs108|chr18 (553 aa)
initn: 450 init1: 450 opt: 450 Z-score: 612.5 bits: 120.7 E(32554): 8.5e-28
Smith-Waterman score: 450; 61.2% identity (82.5% similar) in 103 aa overlap (2-104:450-552)
10 20 30
pF1KE2 MVKQIESKTAFQEALDAAGDKLVVVDFSATW
:: : :: :. .: ::..::.:::::::
CCDS42 PKSLEEATPSKEGDILKPEEETMEFPEGDKVKVILSKEDFEASLKEAGERLVAVDFSATW
420 430 440 450 460 470
40 50 60 70 80 90
pF1KE2 CGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSG
::::. :.::::.:: :. .:.:::::.:.:..:. :: . :.:::::.:: .:: :. :
CCDS42 CGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCG
480 490 500 510 520 530
100
pF1KE2 ANKEKLEATINELV
: ::::::.: ::
CCDS42 ALKEKLEAVIAELK
540 550
>>CCDS35104.1 TXNDC8 gene_id:255220|Hs108|chr9 (115 aa)
initn: 310 init1: 310 opt: 310 Z-score: 432.0 bits: 85.1 E(32554): 9.6e-18
Smith-Waterman score: 310; 51.1% identity (76.7% similar) in 90 aa overlap (1-90:1-90)
10 20 30 40 50 60
pF1KE2 MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD
::. :.. . :. : ::: ::.::.::. ::::: . : ::..: ::.::.: .:::.
CCDS35 MVQIIKDTNEFKTFLTAAGHKLAVVQFSSKRCGPCKRMFPVFHAMSVKYQNVFFANVDVN
10 20 30 40 50 60
70 80 90 100
pF1KE2 DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELV
. ..: :..: .::::.:::.::: ::
CCDS35 NSPELAETCHIKTIPTFQMFKKSQKVTLFSRIKRIICCYRSGFMSNLCLADDGNE
70 80 90 100 110
>>CCDS59139.1 TXN gene_id:7295|Hs108|chr9 (85 aa)
initn: 300 init1: 300 opt: 300 Z-score: 420.3 bits: 82.5 E(32554): 4.3e-17
Smith-Waterman score: 525; 81.0% identity (81.0% similar) in 105 aa overlap (1-105:1-85)
10 20 30 40 50 60
pF1KE2 MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD
:::::::::::::::::::::::::::::::::::::::::::
CCDS59 MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFH-----------------
10 20 30 40
70 80 90 100
pF1KE2 DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELV
::::::::::::::::::::::::::::::::::::::::::
CCDS59 ---DVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELV
50 60 70 80
>>CCDS11961.1 TXNL1 gene_id:9352|Hs108|chr18 (289 aa)
initn: 284 init1: 284 opt: 284 Z-score: 391.1 bits: 78.8 E(32554): 1.8e-15
Smith-Waterman score: 284; 41.2% identity (68.6% similar) in 102 aa overlap (2-103:4-105)
10 20 30 40 50
pF1KE2 MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVD
:: . : :: :..::..:.:: :. :::: : : : :.:.:: ...:::::
CCDS11 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD
10 20 30 40 50 60
60 70 80 90 100
pF1KE2 VDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELV
: .:: .:. ... ::: ::.. .. ...::. :: :..
CCDS11 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP
70 80 90 100 110 120
CCDS11 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDTTFLESDCDEQLLITVAFNQPVKLYSM
130 140 150 160 170 180
>>CCDS13928.1 TXN2 gene_id:25828|Hs108|chr22 (166 aa)
initn: 127 init1: 115 opt: 229 Z-score: 319.8 bits: 64.8 E(32554): 1.7e-11
Smith-Waterman score: 229; 36.9% identity (71.8% similar) in 103 aa overlap (5-105:64-165)
10 20 30
pF1KE2 MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGP
:.. ::. . . .. ::::: : ::::
CCDS13 TPQCSPGGLTVTPNPARTIYTTRISLTTFNIQDGPDFQDRV-VNSETPVVVDFHAQWCGP
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE2 CKMIKPFFHSL-SEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGAN
::.. : .... ......:.. .::.:: :.: : ::. .:: .:.:. : .: : .
CCDS13 CKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIK
100 110 120 130 140 150
100
pF1KE2 KE-KLEATINELV
: .::: ...:.
CCDS13 DEDQLEAFLKKLIG
160
105 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 17:41:57 2016 done: Tue Nov 8 17:41:58 2016
Total Scan time: 1.130 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]