FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4380, 400 aa
  1>>>pF1KE4380 400 - 400 aa - 400 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4853+/-0.000421; mu= -1.1799+/- 0.026
 mean_var=245.8472+/-49.286, 0's: 0 Z-trim(118.8): 13  B-trim: 58 in 1/55
 Lambda= 0.081798
 statistics sampled from 32015 (32028) to 32015 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.376), width:  16
 Scan time:  9.950

The best scores are:                                      opt bits E(85289)
NP_808800 (OMIM: 606804) Golgi membrane protein 1  ( 401) 2600 319.8 7.4e-87
NP_057632 (OMIM: 606804) Golgi membrane protein 1  ( 401) 2600 319.8 7.4e-87


>>NP_808800 (OMIM: 606804) Golgi membrane protein 1 [Hom  (401 aa)
 initn: 2600 init1: 2600 opt: 2600  Z-score: 1680.3  bits: 319.8 E(85289): 7.4e-87
Smith-Waterman score: 2600; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:2-401)

                10        20        30        40        50         
pF1KE4  MGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_808 MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE4 GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKAVLVNNITTGERLIRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_808 GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKAVLVNNITTGERLIRVL
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE4 QDQLKTLQRNYGRLQQDVLQFQKNQTNLERKFSYDLSQCINQMKEVKEQCEERIEEVTKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_808 QDQLKTLQRNYGRLQQDVLQFQKNQTNLERKFSYDLSQCINQMKEVKEQCEERIEEVTKK
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE4 GNEAVASRDLSENNDQRQQLQALSEPQPRLQAAGLPHTEVPQGKGNVLGNSKSQTPAPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_808 GNEAVASRDLSENNDQRQQLQALSEPQPRLQAAGLPHTEVPQGKGNVLGNSKSQTPAPSS
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KE4 EVVLDSKRQVEKEETNEIQVVNEEPQRDRLPQEPGREQVVEDRPVGGRGFGGAGELGQTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_808 EVVLDSKRQVEKEETNEIQVVNEEPQRDRLPQEPGREQVVEDRPVGGRGFGGAGELGQTP
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE4 QVQAALSVSQENPEMEGPERDQLVIPDGQEEEQEAAGEGRNQQKLRGEDDYNMDENEAES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_808 QVQAALSVSQENPEMEGPERDQLVIPDGQEEEQEAAGEGRNQQKLRGEDDYNMDENEAES
              310       320       330       340       350       360

     360       370       380       390       400
pF1KE4 ETDKQAALAGNDRNIDVFNVEDQKRDTINLLDQREKRNHTL
       :::::::::::::::::::::::::::::::::::::::::
NP_808 ETDKQAALAGNDRNIDVFNVEDQKRDTINLLDQREKRNHTL
              370       380       390       400 

>>NP_057632 (OMIM: 606804) Golgi membrane protein 1 [Hom  (401 aa)
 initn: 2600 init1: 2600 opt: 2600  Z-score: 1680.3  bits: 319.8 E(85289): 7.4e-87
Smith-Waterman score: 2600; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:2-401)

                10        20        30        40        50         
pF1KE4  MGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE4 GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKAVLVNNITTGERLIRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKAVLVNNITTGERLIRVL
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE4 QDQLKTLQRNYGRLQQDVLQFQKNQTNLERKFSYDLSQCINQMKEVKEQCEERIEEVTKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 QDQLKTLQRNYGRLQQDVLQFQKNQTNLERKFSYDLSQCINQMKEVKEQCEERIEEVTKK
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE4 GNEAVASRDLSENNDQRQQLQALSEPQPRLQAAGLPHTEVPQGKGNVLGNSKSQTPAPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GNEAVASRDLSENNDQRQQLQALSEPQPRLQAAGLPHTEVPQGKGNVLGNSKSQTPAPSS
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KE4 EVVLDSKRQVEKEETNEIQVVNEEPQRDRLPQEPGREQVVEDRPVGGRGFGGAGELGQTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 EVVLDSKRQVEKEETNEIQVVNEEPQRDRLPQEPGREQVVEDRPVGGRGFGGAGELGQTP
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE4 QVQAALSVSQENPEMEGPERDQLVIPDGQEEEQEAAGEGRNQQKLRGEDDYNMDENEAES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 QVQAALSVSQENPEMEGPERDQLVIPDGQEEEQEAAGEGRNQQKLRGEDDYNMDENEAES
              310       320       330       340       350       360

     360       370       380       390       400
pF1KE4 ETDKQAALAGNDRNIDVFNVEDQKRDTINLLDQREKRNHTL
       :::::::::::::::::::::::::::::::::::::::::
NP_057 ETDKQAALAGNDRNIDVFNVEDQKRDTINLLDQREKRNHTL
              370       380       390       400 




400 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:59:55 2016 done: Sat Nov  5 22:59:57 2016
 Total Scan time:  9.950 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]