FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3189, 432 aa
  1>>>pF1KE3189 432 - 432 aa - 432 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.7321+/-0.00108; mu= -7.5172+/- 0.066
 mean_var=535.2169+/-109.208, 0's: 0 Z-trim(117.4): 65  B-trim: 61 in 1/53
 Lambda= 0.055438
 statistics sampled from 18061 (18124) to 18061 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.818), E-opt: 0.2 (0.557), width:  16
 Scan time:  2.910

The best scores are:                                      opt bits E(32554)
CCDS35045.1 FOXB2 gene_id:442425|Hs108|chr9        ( 432) 3073 259.9 3.6e-69
CCDS32255.1 FOXB1 gene_id:27023|Hs108|chr15        ( 325)  771 75.6 7.9e-14


>>CCDS35045.1 FOXB2 gene_id:442425|Hs108|chr9             (432 aa)
 initn: 3073 init1: 3073 opt: 3073  Z-score: 1355.3  bits: 259.9 E(32554): 3.6e-69
Smith-Waterman score: 3073; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)

               10        20        30        40        50        60
pF1KE3 MPRPGKSSYSDQKPPYSYISLTAMAIQHSAEKMLPLSDIYKFIMERFPYYREHTQRWQNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MPRPGKSSYSDQKPPYSYISLTAMAIQHSAEKMLPLSDIYKFIMERFPYYREHTQRWQNS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LRHNLSFNDCFIKIPRRPDQPGKGSFWALHPDCGDMFENGSFLRRRKRFKVLRADHTHLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LRHNLSFNDCFIKIPRRPDQPGKGSFWALHPDCGDMFENGSFLRRRKRFKVLRADHTHLH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AGSTKSAPGAGPGGHLHPHHHHHPHHHHHHHAAAHHHHHHHPPQPPPPPPPPPPHMVHYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AGSTKSAPGAGPGGHLHPHHHHHPHHHHHHHAAAHHHHHHHPPQPPPPPPPPPPHMVHYF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 HQQPPTAPQPPPHLPSQPPQQPPQQSQPQQPSHPGKMQEAAAVAAAAAAAAAAAVGSVGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 HQQPPTAPQPPPHLPSQPPQQPPQQSQPQQPSHPGKMQEAAAVAAAAAAAAAAAVGSVGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 LSQFPPYGLGSAAAAAAAAAASTSGFKHPFAIENIIGRDYKGVLQAGGLPLASVMHHLGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LSQFPPYGLGSAAAAAAAAAASTSGFKHPFAIENIIGRDYKGVLQAGGLPLASVMHHLGY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 PVPGQLGNVVSSVWPHVGVMDSVAAAAAAAAAAGVPVGPEYGAFGVPVKSLCHSASQSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PVPGQLGNVVSSVWPHVGVMDSVAAAAAAAAAAGVPVGPEYGAFGVPVKSLCHSASQSLP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 AMPVPIKPTPALPPVSALQPGLTVPAASQQPPAPSTVCSAAAASPVASLLEPTAPTSAES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AMPVPIKPTPALPPVSALQPGLTVPAASQQPPAPSTVCSAAAASPVASLLEPTAPTSAES
              370       380       390       400       410       420

              430  
pF1KE3 KGGSLHSVLVHS
       ::::::::::::
CCDS35 KGGSLHSVLVHS
              430  

>>CCDS32255.1 FOXB1 gene_id:27023|Hs108|chr15             (325 aa)
 initn: 1148 init1: 771 opt: 771  Z-score: 361.7  bits: 75.6 E(32554): 7.9e-14
Smith-Waterman score: 1031; 46.0% identity (61.0% similar) in 441 aa overlap (1-431:1-325)

               10        20        30        40        50        60
pF1KE3 MPRPGKSSYSDQKPPYSYISLTAMAIQHSAEKMLPLSDIYKFIMERFPYYREHTQRWQNS
       :::::...::::::::::::::::::: : :::::::.::::::.:::::::.:::::::
CCDS32 MPRPGRNTYSDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LRHNLSFNDCFIKIPRRPDQPGKGSFWALHPDCGDMFENGSFLRRRKRFKVLRADHTHLH
       :::::::::::::::::::::::::::::::.::::::::::::::::::::..::    
CCDS32 LRHNLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRKRFKVLKSDHL---
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE3 AGSTKSAPGAGPGGHLHPHHHHHPHHHHHHHAAAHHHHHHHPPQPPPPPPPPPPHMVHYF
                                                        :  :   ..:.
CCDS32 ------------------------------------------------APSKPADAAQYL
                                                       120         

              190       200       210       220       230       240
pF1KE3 HQQPPTAPQPPPHLPSQPPQQPPQQSQPQQPSHPGKMQEAAAVAAAAAAAAAAAVGSVGR
       .::                               .:..           .: :: :.  .
CCDS32 QQQ-------------------------------AKLR----------LSALAASGT--H
     130                                                140        

              250       260       270       280       290          
pF1KE3 LSQFPPYGLGSAAAAAAAAAASTSGFKHPFAIENIIGRDYKGVLQAGGLPLASVMHHL--
       : :.:      :::   ...:. :::::::::::::.:.::   . ::: . :.:. .  
CCDS32 LPQMP------AAAYNLGGVAQPSGFKHPFAIENIIAREYK---MPGGLAF-SAMQPVPA
        150             160       170       180           190      

      300       310           320       330       340       350    
pF1KE3 GYPVPGQLGNVVSSV---WPHV-GVMDSVAAAAAAAAAAGVPVGPEYGAFGVPVKSLCHS
       .::.:.:: .. ::.   :::: :    . .:.  . :.:     .:.:.:::.: :::.
CCDS32 AYPLPNQLTTMGSSLGTGWPHVYGSAGMIDSATPISMASG-----DYSAYGVPLKPLCHA
        200       210       220       230            240       250 

          360       370       380          390       400       410 
pF1KE3 ASQSLPAMPVPIKPTPALPPVSALQPGLTVPAA---SQQPPAPSTVCSAAAASPVASLLE
       :.:.:::.:::::::::  :  :: :.: .:     :..::. : . : .:.:  .    
CCDS32 AGQTLPAIPVPIKPTPAAVP--AL-PALPAPIPTLLSNSPPSLSPTSSQTATSQSS----
             260       270          280       290       300        

              420       430  
pF1KE3 PTAPT-SAESKGGSLHSVLVHS
       :..:. .  : ...:::: :: 
CCDS32 PATPSETLTSPASALHSVAVH 
          310       320      




432 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 02:09:07 2016 done: Tue Nov  8 02:09:08 2016
 Total Scan time:  2.910 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]