FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6260, 184 aa
  1>>>pF1KE6260 184 - 184 aa - 184 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9113+/-0.000277; mu= 6.4009+/- 0.017
 mean_var=134.9060+/-26.458, 0's: 0 Z-trim(123.2): 19  B-trim: 392 in 1/56
 Lambda= 0.110423
 statistics sampled from 42607 (42630) to 42607 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.5), width:  16
 Scan time:  5.440

The best scores are:                                      opt bits E(85289)
NP_835466 (OMIM: 612757,615947) glycosylphosphatid ( 184) 1273 212.9 2.3e-55
NP_001288701 (OMIM: 612757,615947) glycosylphospha ( 125)  865 147.8 6.4e-36


>>NP_835466 (OMIM: 612757,615947) glycosylphosphatidylin  (184 aa)
 initn: 1273 init1: 1273 opt: 1273  Z-score: 1114.9  bits: 212.9 E(85289): 2.3e-55
Smith-Waterman score: 1273; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KE6 MKALGAVLLALLLFGRPGRGQTQQEEEEEDEDHGPDDYDEEDEDEVEEEETNRLPGGRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 MKALGAVLLALLLFGRPGRGQTQQEEEEEDEDHGPDDYDEEDEDEVEEEETNRLPGGRSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VLLRCYTCKSLPRDERCNLTQNCSHGQTCTTLIAHGNTESGLLTTHSTWCTDSCQPITKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 VLLRCYTCKSLPRDERCNLTQNCSHGQTCTTLIAHGNTESGLLTTHSTWCTDSCQPITKT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VEGTQVTMTCCQSSLCNVPPWQSSRVQDPTGKGAGGPRGSSETVGAALLLNLLAGLGAMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 VEGTQVTMTCCQSSLCNVPPWQSSRVQDPTGKGAGGPRGSSETVGAALLLNLLAGLGAMG
              130       140       150       160       170       180

           
pF1KE6 ARRP
       ::::
NP_835 ARRP
           

>>NP_001288701 (OMIM: 612757,615947) glycosylphosphatidy  (125 aa)
 initn: 865 init1: 865 opt: 865  Z-score: 765.9  bits: 147.8 E(85289): 6.4e-36
Smith-Waterman score: 865; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE6 MKALGAVLLALLLFGRPGRGQTQQEEEEEDEDHGPDDYDEEDEDEVEEEETNRLPGGRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKALGAVLLALLLFGRPGRGQTQQEEEEEDEDHGPDDYDEEDEDEVEEEETNRLPGGRSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VLLRCYTCKSLPRDERCNLTQNCSHGQTCTTLIAHGNTESGLLTTHSTWCTDSCQPITKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLLRCYTCKSLPRDERCNLTQNCSHGQTCTTLIAHGNTESGLLTTHSTWCTDSCQPITKT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VEGTQVTMTCCQSSLCNVPPWQSSRVQDPTGKGAGGPRGSSETVGAALLLNLLAGLGAMG
       :::::                                                       
NP_001 VEGTQ                                                       
                                                                   




184 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:34:12 2016 done: Tue Nov  8 11:34:13 2016
 Total Scan time:  5.440 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]