FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6260, 184 aa
  1>>>pF1KE6260 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2418+/-0.000666; mu= 10.6841+/- 0.040
 mean_var=131.6051+/-25.290, 0's: 0 Z-trim(115.9): 15  B-trim: 0 in 0/51
 Lambda= 0.111799
 statistics sampled from 16475 (16487) to 16475 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.506), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS34954.1 GPIHBP1 gene_id:338328|Hs108|chr8      ( 184) 1273 215.2 1.8e-56


>>CCDS34954.1 GPIHBP1 gene_id:338328|Hs108|chr8           (184 aa)
 initn: 1273 init1: 1273 opt: 1273  Z-score: 1127.3  bits: 215.2 E(32554): 1.8e-56
Smith-Waterman score: 1273; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KE6 MKALGAVLLALLLFGRPGRGQTQQEEEEEDEDHGPDDYDEEDEDEVEEEETNRLPGGRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKALGAVLLALLLFGRPGRGQTQQEEEEEDEDHGPDDYDEEDEDEVEEEETNRLPGGRSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VLLRCYTCKSLPRDERCNLTQNCSHGQTCTTLIAHGNTESGLLTTHSTWCTDSCQPITKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VLLRCYTCKSLPRDERCNLTQNCSHGQTCTTLIAHGNTESGLLTTHSTWCTDSCQPITKT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VEGTQVTMTCCQSSLCNVPPWQSSRVQDPTGKGAGGPRGSSETVGAALLLNLLAGLGAMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VEGTQVTMTCCQSSLCNVPPWQSSRVQDPTGKGAGGPRGSSETVGAALLLNLLAGLGAMG
              130       140       150       160       170       180

           
pF1KE6 ARRP
       ::::
CCDS34 ARRP
           




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:34:12 2016 done: Tue Nov  8 11:34:12 2016
 Total Scan time:  1.520 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]