FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6665, 290 aa 1>>>pF1KE6665 290 - 290 aa - 290 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8565+/-0.000404; mu= 8.6010+/- 0.025 mean_var=104.7117+/-20.618, 0's: 0 Z-trim(114.4): 8 B-trim: 0 in 0/54 Lambda= 0.125336 statistics sampled from 24274 (24280) to 24274 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.285), width: 16 Scan time: 5.570 The best scores are: opt bits E(85289) NP_001035808 (OMIM: 214400,606598,607706,607831,60 ( 290) 1902 354.3 1.5e-97 NP_061845 (OMIM: 214400,606598,607706,607831,60834 ( 358) 1902 354.4 1.8e-97 XP_011515854 (OMIM: 214400,606598,607706,607831,60 ( 249) 1635 306.0 4.6e-83 XP_011515853 (OMIM: 214400,606598,607706,607831,60 ( 456) 1274 240.9 3.5e-63 XP_016869074 (OMIM: 214400,606598,607706,607831,60 ( 419) 1064 202.9 8.7e-52 XP_016869075 (OMIM: 214400,606598,607706,607831,60 ( 385) 823 159.3 1.1e-38 >>NP_001035808 (OMIM: 214400,606598,607706,607831,608340 (290 aa) initn: 1902 init1: 1902 opt: 1902 Z-score: 1872.1 bits: 354.3 E(85289): 1.5e-97 Smith-Waterman score: 1902; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290) 10 20 30 40 50 60 pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MRLNSTGEVPVLIHGENIICEATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DSLPMDAYTHGCILHPELTVDSMIPAYATTRIRSQIGNTESELKKLAEENPDLQEAYIAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DSLPMDAYTHGCILHPELTVDSMIPAYATTRIRSQIGNTESELKKLAEENPDLQEAYIAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 QKRLKSKLLDHDNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQPWLCGESFTLAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QKRLKSKLLDHDNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQPWLCGESFTLAD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 VSLAVTLHRLKFLGFARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VSLAVTLHRLKFLGFARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTA 190 200 210 220 230 240 250 260 270 280 290 pF1KE6 FRVAKKRAPKVLGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPRPNYF :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FRVAKKRAPKVLGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPRPNYF 250 260 270 280 290 >>NP_061845 (OMIM: 214400,606598,607706,607831,608340) g (358 aa) initn: 1902 init1: 1902 opt: 1902 Z-score: 1870.7 bits: 354.4 E(85289): 1.8e-97 Smith-Waterman score: 1902; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:69-358) 10 20 30 pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLE :::::::::::::::::::::::::::::: NP_061 KVRLVIAEKALKCEEHDVSLPLSEHNEPWFMRLNSTGEVPVLIHGENIICEATQIIDYLE 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE6 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE6 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ 160 170 180 190 200 210 160 170 180 190 200 210 pF1KE6 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET 220 230 240 250 260 270 220 230 240 250 260 270 pF1KE6 YYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 YYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFM 280 290 300 310 320 330 280 290 pF1KE6 LFRKRLGSMILAFRPRPNYF :::::::::::::::::::: NP_061 LFRKRLGSMILAFRPRPNYF 340 350 >>XP_011515854 (OMIM: 214400,606598,607706,607831,608340 (249 aa) initn: 1635 init1: 1635 opt: 1635 Z-score: 1612.2 bits: 306.0 E(85289): 4.6e-83 Smith-Waterman score: 1635; 100.0% identity (100.0% similar) in 249 aa overlap (42-290:1-249) 20 30 40 50 60 70 pF1KE6 LIHGENIICEATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHG :::::::::::::::::::::::::::::: XP_011 MPDKESMYYPRVQHYRELLDSLPMDAYTHG 10 20 30 80 90 100 110 120 130 pF1KE6 CILHPELTVDSMIPAYATTRIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CILHPELTVDSMIPAYATTRIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDH 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE6 DNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLK 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE6 FLGFARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FLGFARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKV 160 170 180 190 200 210 260 270 280 290 pF1KE6 LGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPRPNYF ::::::::::::::::::::::::::::::::::::::: XP_011 LGTTLVVGLLAGVGYFAFMLFRKRLGSMILAFRPRPNYF 220 230 240 >>XP_011515853 (OMIM: 214400,606598,607706,607831,608340 (456 aa) initn: 1272 init1: 1272 opt: 1274 Z-score: 1255.4 bits: 240.9 E(85289): 3.5e-63 Smith-Waterman score: 1371; 79.7% identity (80.0% similar) in 290 aa overlap (1-290:225-456) 10 20 30 pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLE :::::::::::::::::::::::::::::: XP_011 KVRLVIAEKALKCEEHDVSLPLSEHNEPWFMRLNSTGEVPVLIHGENIICEATQIIDYLE 200 210 220 230 240 250 40 50 60 70 80 90 pF1KE6 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT ::::: XP_011 QTFLD------------------------------------------------------- 100 110 120 130 140 150 pF1KE6 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ .:::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ---GQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ 260 270 280 290 300 310 160 170 180 190 200 210 pF1KE6 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET 320 330 340 350 360 370 220 230 240 250 260 270 pF1KE6 YYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGTTLVVGLLAGVGYFAFM 380 390 400 410 420 430 280 290 pF1KE6 LFRKRLGSMILAFRPRPNYF :::::::::::::::::::: XP_011 LFRKRLGSMILAFRPRPNYF 440 450 >>XP_016869074 (OMIM: 214400,606598,607706,607831,608340 (419 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1050.7 bits: 202.9 E(85289): 8.7e-52 Smith-Waterman score: 1064; 97.6% identity (98.2% similar) in 168 aa overlap (1-168:225-392) 10 20 30 pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLE :::::::::::::::::::::::::::::: XP_016 KVRLVIAEKALKCEEHDVSLPLSEHNEPWFMRLNSTGEVPVLIHGENIICEATQIIDYLE 200 210 220 230 240 250 40 50 60 70 80 90 pF1KE6 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT 260 270 280 290 300 310 100 110 120 130 140 150 pF1KE6 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ 320 330 340 350 360 370 160 170 180 190 200 210 pF1KE6 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET ::::::::::::: .: XP_016 VETELQRRNEETPASHMQHTGGRTAHLVPKTTVDLAELAALTVYQ 380 390 400 410 >>XP_016869075 (OMIM: 214400,606598,607706,607831,608340 (385 aa) initn: 823 init1: 823 opt: 823 Z-score: 815.8 bits: 159.3 E(85289): 1.1e-38 Smith-Waterman score: 823; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:225-349) 10 20 30 pF1KE6 MRLNSTGEVPVLIHGENIICEATQIIDYLE :::::::::::::::::::::::::::::: XP_016 KVRLVIAEKALKCEEHDVSLPLSEHNEPWFMRLNSTGEVPVLIHGENIICEATQIIDYLE 200 210 220 230 240 250 40 50 60 70 80 90 pF1KE6 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIPAYATT 260 270 280 290 300 310 100 110 120 130 140 150 pF1KE6 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ ::::::::::::::::::::::::::::::::::: XP_016 RIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKVFHHWKSSLDLHPSMCRPDLLCPLR 320 330 340 350 360 370 160 170 180 190 200 210 pF1KE6 VETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHRLKFLGFARRNWGNGKRPNLET XP_016 SVLYGQPFSFC 380 290 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:14:29 2016 done: Tue Nov 8 15:14:30 2016 Total Scan time: 5.570 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]