FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6384, 331 aa
  1>>>pF1KE6384 331 - 331 aa - 331 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1673+/-0.00108; mu= 15.7975+/- 0.064
 mean_var=58.2734+/-12.255, 0's: 0 Z-trim(101.3): 44  B-trim: 3 in 1/48
 Lambda= 0.168012
 statistics sampled from 6442 (6455) to 6442 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.549), E-opt: 0.2 (0.198), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS34756.1 SLC35B4 gene_id:84912|Hs108|chr7       ( 331) 2173 535.5 2.2e-152


>>CCDS34756.1 SLC35B4 gene_id:84912|Hs108|chr7            (331 aa)
 initn: 2173 init1: 2173 opt: 2173  Z-score: 2849.2  bits: 535.5 E(32554): 2.2e-152
Smith-Waterman score: 2173; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)

               10        20        30        40        50        60
pF1KE6 MRPALAVGLVFAGCCSNVIFLELLARKHPGCGNIVTFAQFLFIAVEGFLFEADLGRKPPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MRPALAVGLVFAGCCSNVIFLELLARKHPGCGNIVTFAQFLFIAVEGFLFEADLGRKPPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 IPIRYYAIMVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKRYSIFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IPIRYYAIMVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKRYSIFK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 YTSIALVSVGIFICTFMSAKQVTSQSSLSENDGFQAFVWWLLGIGALTFALLMSARMGIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YTSIALVSVGIFICTFMSAKQVTSQSSLSENDGFQAFVWWLLGIGALTFALLMSARMGIF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 QETLYKRFGKHSKEALFYNHALPLPGFVFLASDIYDHAVLFNKSELYEIPVIGVTLPIMW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QETLYKRFGKHSKEALFYNHALPLPGFVFLASDIYDHAVLFNKSELYEIPVIGVTLPIMW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 FYLLMNIITQYVCIRGVFILTTECASLTVTLVVTLRKFVSLIFSILYFQNPFTLWHWLGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FYLLMNIITQYVCIRGVFILTTECASLTVTLVVTLRKFVSLIFSILYFQNPFTLWHWLGT
              250       260       270       280       290       300

              310       320       330 
pF1KE6 LFVFIGTLMYTEVWNNLGTTKSEPQKDSKKN
       :::::::::::::::::::::::::::::::
CCDS34 LFVFIGTLMYTEVWNNLGTTKSEPQKDSKKN
              310       320       330 




331 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:47:07 2016 done: Tue Nov  8 12:47:07 2016
 Total Scan time:  2.000 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]