Result of FASTA (omim) for
pFN21AE1612
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1612, 119 aa
1>>>pF1KE1612 119 - 119 aa - 119 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4801+/-0.00029; mu= 15.1390+/- 0.018
mean_var=58.7803+/-11.627, 0's: 0 Z-trim(118.5): 67 B-trim: 559 in 2/53
Lambda= 0.167286
statistics sampled from 31381 (31450) to 31381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.369), width: 16
Scan time: 4.750
The best scores are: opt bits E(85289)
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 813 203.5 6.9e-53
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 813 203.5 6.9e-53
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 813 203.5 6.9e-53
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 231 62.9 1.1e-10
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 224 61.2 3.5e-10
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 224 61.2 3.5e-10
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 224 61.2 3.6e-10
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 223 61.0 4.1e-10
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 223 61.0 4.4e-10
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 222 60.7 5.1e-10
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 217 59.5 1.1e-09
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 214 58.8 2e-09
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 211 58.1 3.1e-09
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 203 56.1 1.1e-08
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 201 55.7 1.7e-08
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 201 55.7 1.9e-08
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 189 52.8 1.2e-07
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 189 52.8 1.2e-07
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 189 52.9 1.7e-07
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 178 50.2 9e-07
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 178 50.2 9e-07
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 176 49.6 1e-06
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 176 49.7 1.3e-06
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 167 47.4 4.8e-06
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 165 47.1 8.3e-06
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 165 47.1 9.1e-06
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 163 46.6 1.1e-05
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 162 46.3 1.4e-05
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 162 46.3 1.4e-05
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 161 46.1 1.8e-05
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 161 46.2 1.9e-05
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 158 45.3 2.2e-05
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 158 45.3 2.2e-05
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre ( 96) 156 44.8 3.2e-05
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 150 43.4 8.7e-05
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 149 43.1 0.0001
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 149 43.2 0.00012
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 149 43.2 0.00012
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 149 43.6 0.00029
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 134 39.5 0.0012
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 134 39.5 0.0013
NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140) 131 38.9 0.0027
XP_016882611 (OMIM: 602565) PREDICTED: C-C motif c ( 149) 129 38.5 0.004
NP_001188288 (OMIM: 602565) C-C motif chemokine 25 ( 149) 129 38.5 0.004
XP_016882610 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 129 38.5 0.004
XP_011526479 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 129 38.5 0.004
XP_016882609 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 129 38.5 0.004
NP_005615 (OMIM: 602565) C-C motif chemokine 25 is ( 150) 129 38.5 0.004
XP_016882608 (OMIM: 602565) PREDICTED: C-C motif c ( 210) 129 38.6 0.0052
>>XP_011514762 (OMIM: 602495) PREDICTED: C-C motif chemo (119 aa)
initn: 813 init1: 813 opt: 813 Z-score: 1070.5 bits: 203.5 E(85289): 6.9e-53
Smith-Waterman score: 813; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KE1 MAGLMTIVTSLLFLGVCAHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRSTCLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAGLMTIVTSLLFLGVCAHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRSTCLK
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 AGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQTTC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQTTC
70 80 90 100 110
>>NP_002982 (OMIM: 602495) C-C motif chemokine 24 precur (119 aa)
initn: 813 init1: 813 opt: 813 Z-score: 1070.5 bits: 203.5 E(85289): 6.9e-53
Smith-Waterman score: 813; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KE1 MAGLMTIVTSLLFLGVCAHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRSTCLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAGLMTIVTSLLFLGVCAHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRSTCLK
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 AGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQTTC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQTTC
70 80 90 100 110
>>XP_011514761 (OMIM: 602495) PREDICTED: C-C motif chemo (119 aa)
initn: 813 init1: 813 opt: 813 Z-score: 1070.5 bits: 203.5 E(85289): 6.9e-53
Smith-Waterman score: 813; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KE1 MAGLMTIVTSLLFLGVCAHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRSTCLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAGLMTIVTSLLFLGVCAHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRSTCLK
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 AGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQTTC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQTTC
70 80 90 100 110
>>NP_006264 (OMIM: 158106) C-C motif chemokine 7 precurs (99 aa)
initn: 241 init1: 222 opt: 231 Z-score: 312.5 bits: 62.9 E(85289): 1.1e-10
Smith-Waterman score: 231; 36.0% identity (65.0% similar) in 100 aa overlap (5-99:1-98)
10 20 30 40 50
pF1KE1 MAGLMTIVTSLLFLGVCAHHIIPTG-----SVVIPSPCCMFFVSKRIPENRVVSYQLSSR
: ..:: : . : . : : .. . ::. :..:.::..:. ::. ..
NP_006 MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTS
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 STCLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGN
: : . .::: :: ...:.:: :.::: .::.:: .: .:.
NP_006 SHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLD--KKTQTPKL
60 70 80 90
pF1KE1 QTTC
>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3- (93 aa)
initn: 188 init1: 133 opt: 224 Z-score: 303.7 bits: 61.2 E(85289): 3.5e-10
Smith-Waterman score: 224; 36.2% identity (73.8% similar) in 80 aa overlap (11-90:12-90)
10 20 30 40 50
pF1KE1 MAGLMTIVTSLLFLGVCAHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRSTCL
: ...: . . .. :. ::. ..:..::.: ...: . . : :
NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADY-FETSSQCS
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 KAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQTTC
: .::: ::.:.: :.::..::::.:...:.
NP_066 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like (93 aa)
initn: 188 init1: 133 opt: 224 Z-score: 303.7 bits: 61.2 E(85289): 3.5e-10
Smith-Waterman score: 224; 36.2% identity (73.8% similar) in 80 aa overlap (11-90:12-90)
10 20 30 40 50
pF1KE1 MAGLMTIVTSLLFLGVCAHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRSTCL
: ...: . . .. :. ::. ..:..::.: ...: . . : :
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADY-FETSSQCS
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 KAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQTTC
: .::: ::.:.: :.::..::::.:...:.
NP_001 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_002977 (OMIM: 600807,601156,609423) eotaxin precurs (97 aa)
initn: 211 init1: 211 opt: 224 Z-score: 303.5 bits: 61.2 E(85289): 3.6e-10
Smith-Waterman score: 224; 35.7% identity (69.4% similar) in 98 aa overlap (5-99:1-96)
10 20 30 40 50
pF1KE1 MAGLMTIVTSLLFLGVCAHHIIP---TGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRST
: . ..::.: . : . : .: . .:. ::. .....:: .:. ::. . .
NP_002 MKVSAALLWLLLIAAAFSPQGLAGPASVPTTCCFNLANRKIPLQRLESYRRITSGK
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 CLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQT
: . .::: :: ....:.:::..::: :: :: ::. .:.
NP_002 CPQKAVIFKTKLAKDICADPKKKWVQDSMKYLD--QKSPTPKP
60 70 80 90
pF1KE1 TC
>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3 (92 aa)
initn: 199 init1: 133 opt: 223 Z-score: 302.5 bits: 61.0 E(85289): 4.1e-10
Smith-Waterman score: 223; 35.6% identity (70.0% similar) in 90 aa overlap (5-90:1-89)
10 20 30 40 50
pF1KE1 MAGLMTIVTSLLFLGVCAHHIIPTGSVVI----PSPCCMFFVSKRIPENRVVSYQLSSRS
: . :. : . .:. . :. . :. ::. ..:..::.: ...: . . :
NP_002 MQVSTAALAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADY-FETSS
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 TCLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQ
: : :::: ::...: :.::..::::.:...:.
NP_002 QCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
pF1KE1 TTC
>>NP_005614 (OMIM: 602283) C-C motif chemokine 8 precurs (99 aa)
initn: 209 init1: 209 opt: 223 Z-score: 302.0 bits: 61.0 E(85289): 4.4e-10
Smith-Waterman score: 223; 37.4% identity (62.6% similar) in 99 aa overlap (5-98:1-99)
10 20 30 40 50
pF1KE1 MAGLMTIVTSLLFLGVCAHHIIPTG-----SVVIPSPCCMFFVSKRIPENRVVSYQLSSR
: . ..:: : . : . : : :: :: ::. ....:: .:. :: .
NP_005 MKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLESYTRITN
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 STCLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGN
: : .::: ::.:.. :.:::..::. ::.:: .. .:
NP_005 IQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
60 70 80 90
pF1KE1 QTTC
>>NP_005399 (OMIM: 601391) C-C motif chemokine 13 precur (98 aa)
initn: 225 init1: 133 opt: 222 Z-score: 300.8 bits: 60.7 E(85289): 5.1e-10
Smith-Waterman score: 222; 39.8% identity (65.6% similar) in 93 aa overlap (5-92:1-92)
10 20 30 40 50
pF1KE1 MAGLMTIVTSLLFLGVCAHHIIPTG-----SVVIPSPCCMFFVSKRIPENRVVSYQLSSR
: . . :: : . . . : : .. .:: ::. : ::.: .:. :: ...
NP_005 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITT-
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 STCLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGN
: : . .::: :: :...:.:::..::: :::.: :
NP_005 SRCPQKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
60 70 80 90
pF1KE1 QTTC
119 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 11:17:58 2016 done: Sun Nov 6 11:17:59 2016
Total Scan time: 4.750 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]