FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6655, 253 aa
  1>>>pF1KE6655 253 - 253 aa - 253 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5792+/-0.000692; mu= 13.4358+/- 0.042
 mean_var=65.5109+/-12.914, 0's: 0 Z-trim(109.7): 16  B-trim: 0 in 0/51
 Lambda= 0.158459
 statistics sampled from 11067 (11077) to 11067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.34), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS34624.1 PGAM2 gene_id:5224|Hs108|chr7          ( 253) 1714 400.1 7.7e-112
CCDS7458.1 PGAM1 gene_id:5223|Hs108|chr10          ( 254) 1443 338.1 3.5e-93
CCDS35338.1 PGAM4 gene_id:441531|Hs108|chrX        ( 254) 1371 321.6 3.1e-88
CCDS5833.1 BPGM gene_id:669|Hs108|chr7             ( 259)  978 231.8 3.5e-61


>>CCDS34624.1 PGAM2 gene_id:5224|Hs108|chr7               (253 aa)
 initn: 1714 init1: 1714 opt: 1714  Z-score: 2121.3  bits: 400.1 E(32554): 7.7e-112
Smith-Waterman score: 1714; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:1-253)

               10        20        30        40        50        60
pF1KE6 MATHRLVMVRHGESTWNQENRFCGWFDAELSEKGTEEAKRGAKAIKDAKMEFDICYTSVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MATHRLVMVRHGESTWNQENRFCGWFDAELSEKGTEEAKRGAKAIKDAKMEFDICYTSVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KRAIRTLWAILDGTDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEEQVKIWRRSFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KRAIRTLWAILDGTDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEEQVKIWRRSFD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 IPPPPMDEKHPYYNSISKERRYAGLKPGELPTCESLKDTIARALPFWNEEIVPQIKAGKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IPPPPMDEKHPYYNSISKERRYAGLKPGELPTCESLKDTIARALPFWNEEIVPQIKAGKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VLIAAHGNSLRGIVKHLEGMSDQAIMELNLPTGIPIVYELNKELKPTKPMQFLGDEETVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VLIAAHGNSLRGIVKHLEGMSDQAIMELNLPTGIPIVYELNKELKPTKPMQFLGDEETVR
              190       200       210       220       230       240

              250   
pF1KE6 KAMEAVAAQGKAK
       :::::::::::::
CCDS34 KAMEAVAAQGKAK
              250   

>>CCDS7458.1 PGAM1 gene_id:5223|Hs108|chr10               (254 aa)
 initn: 1443 init1: 1443 opt: 1443  Z-score: 1786.5  bits: 338.1 E(32554): 3.5e-93
Smith-Waterman score: 1443; 81.0% identity (93.3% similar) in 253 aa overlap (1-253:1-253)

               10        20        30        40        50        60
pF1KE6 MATHRLVMVRHGESTWNQENRFCGWFDAELSEKGTEEAKRGAKAIKDAKMEFDICYTSVL
       ::...::..:::::.:: :::: ::.::.::  : ::::::..:..:: .:::::.::: 
CCDS74 MAAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KRAIRTLWAILDGTDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEEQVKIWRRSFD
       ::::::::..::. ::::::::::::::::::::::::::::::::::: ::::::::.:
CCDS74 KRAIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 IPPPPMDEKHPYYNSISKERRYAGLKPGELPTCESLKDTIARALPFWNEEIVPQIKAGKR
       .:::::.  ::.:..:::.:::: :   .::.:::::::::::::::::::::::: :::
CCDS74 VPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VLIAAHGNSLRGIVKHLEGMSDQAIMELNLPTGIPIVYELNKELKPTKPMQFLGDEETVR
       :::::::::::::::::::.:..:::::::::::::::::.:.::: :::::::::::::
CCDS74 VLIAAHGNSLRGIVKHLEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVR
              190       200       210       220       230       240

              250    
pF1KE6 KAMEAVAAQGKAK 
       ::::::::::::: 
CCDS74 KAMEAVAAQGKAKK
              250    

>>CCDS35338.1 PGAM4 gene_id:441531|Hs108|chrX             (254 aa)
 initn: 1371 init1: 1371 opt: 1371  Z-score: 1697.5  bits: 321.6 E(32554): 3.1e-88
Smith-Waterman score: 1371; 77.9% identity (91.3% similar) in 253 aa overlap (1-253:1-253)

               10        20        30        40        50        60
pF1KE6 MATHRLVMVRHGESTWNQENRFCGWFDAELSEKGTEEAKRGAKAIKDAKMEFDICYTSVL
       ::...::..:::::::: ::::  :.::.::  : ::::::..:..:: .::::: ::: 
CCDS35 MAAYKLVLIRHGESTWNLENRFSCWYDADLSPAGHEEAKRGGQALRDAGYEFDICLTSVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KRAIRTLWAILDGTDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEEQVKIWRRSFD
       ::.:::::..::. ::::::::::::::::::::::::::::::::::: ::::::::.:
CCDS35 KRVIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 IPPPPMDEKHPYYNSISKERRYAGLKPGELPTCESLKDTIARALPFWNEEIVPQIKAGKR
       .:::::.  ::.:..:::.:::: :   .::. :: :::::::::::::::::::: :::
CCDS35 VPPPPMEPDHPFYSNISKDRRYADLTEDQLPSYESPKDTIARALPFWNEEIVPQIKEGKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 VLIAAHGNSLRGIVKHLEGMSDQAIMELNLPTGIPIVYELNKELKPTKPMQFLGDEETVR
       ::::::::::.::.::.::.:..:::::::::::::::::.:.::: :::::::::::: 
CCDS35 VLIAAHGNSLQGIAKHVEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVC
              190       200       210       220       230       240

              250    
pF1KE6 KAMEAVAAQGKAK 
       ::.:::::::::: 
CCDS35 KAIEAVAAQGKAKK
              250    

>>CCDS5833.1 BPGM gene_id:669|Hs108|chr7                  (259 aa)
 initn: 985 init1: 597 opt: 978  Z-score: 1211.8  bits: 231.8 E(32554): 3.5e-61
Smith-Waterman score: 978; 51.4% identity (80.4% similar) in 255 aa overlap (1-253:1-255)

               10        20        30        40        50        60
pF1KE6 MATHRLVMVRHGESTWNQENRFCGWFDAELSEKGTEEAKRGAKAIKDAKMEFDICYTSVL
       :. ..:.:.::::..::.:::::.: : .:. .: :::.  .: .:  ..:::. .::::
CCDS58 MSKYKLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKALNFEFDLVFTSVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KRAIRTLWAILDGTDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEEQVKIWRRSFD
       .:.:.: : ::.   : :.::  .:::::::::.: :::. . : .::::::..::::..
CCDS58 NRSIHTAWLILEELGQEWVPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYN
               70        80        90       100       110       120

              130       140         150       160       170        
pF1KE6 IPPPPMDEKHPYYNSISKERRYA--GLKPGELPTCESLKDTIARALPFWNEEIVPQIKAG
       . :::..:.::::. : ..:::    .   .::  :::::.. : ::.:::.:.:..  :
CCDS58 VTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRG
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KE6 KRVLIAAHGNSLRGIVKHLEGMSDQAIMELNLPTGIPIVYELNKELKPTKPMQFLGDEET
       : .::.::::: :...:::::.::. :....::::.::. ::...:. . : :::::.:.
CCDS58 KTILISAHGNSSRALLKHLEGISDEDIINITLPTGVPILLELDENLRAVGPHQFLGDQEA
              190       200       210       220       230       240

      240       250       
pF1KE6 VRKAMEAVAAQGKAK    
       .. :.. :  :::.:    
CCDS58 IQAAIKKVEDQGKVKQAKK
              250         




253 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:10:08 2016 done: Tue Nov  8 15:10:09 2016
 Total Scan time:  1.950 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]