FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6525, 95 aa 1>>>pF1KE6525 95 - 95 aa - 95 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0356+/-0.000286; mu= 10.3253+/- 0.018 mean_var=54.4725+/-11.050, 0's: 0 Z-trim(117.6): 9 B-trim: 0 in 0/51 Lambda= 0.173774 statistics sampled from 29789 (29798) to 29789 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.349), width: 16 Scan time: 3.220 The best scores are: opt bits E(85289) NP_001002255 (OMIM: 600320,608829) small ubiquitin ( 95) 632 165.6 1.1e-41 NP_008868 (OMIM: 603042) small ubiquitin-related m ( 95) 533 140.8 3.2e-34 NP_008867 (OMIM: 602231) small ubiquitin-related m ( 103) 500 132.5 1.1e-31 NP_001005849 (OMIM: 603042) small ubiquitin-relate ( 71) 286 78.8 1.1e-15 NP_001273345 (OMIM: 602231) small ubiquitin-relate ( 141) 251 70.1 8.7e-13 NP_003343 (OMIM: 601912,613705) small ubiquitin-re ( 101) 248 69.3 1.1e-12 NP_001005781 (OMIM: 601912,613705) small ubiquitin ( 101) 248 69.3 1.1e-12 NP_001005782 (OMIM: 601912,613705) small ubiquitin ( 76) 214 60.8 3.1e-10 NP_116204 (OMIM: 614525) NFATC2-interacting protei ( 419) 168 49.5 4.2e-06 >>NP_001002255 (OMIM: 600320,608829) small ubiquitin-rel (95 aa) initn: 632 init1: 632 opt: 632 Z-score: 869.4 bits: 165.6 E(85289): 1.1e-41 Smith-Waterman score: 632; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95) 10 20 30 40 50 60 pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 10 20 30 40 50 60 70 80 90 pF1KE6 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY ::::::::::::::::::::::::::::::::::: NP_001 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY 70 80 90 >>NP_008868 (OMIM: 603042) small ubiquitin-related modif (95 aa) initn: 533 init1: 533 opt: 533 Z-score: 735.3 bits: 140.8 E(85289): 3.2e-34 Smith-Waterman score: 533; 85.3% identity (92.6% similar) in 95 aa overlap (1-95:1-95) 10 20 30 40 50 60 pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF ::.::: : ::::::.::::::::::::::::::::.:::::::::::: .:::..:::: NP_008 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 10 20 30 40 50 60 70 80 90 pF1KE6 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY :: ::::. :: ::::::::::::::::: ::::: NP_008 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 70 80 90 >>NP_008867 (OMIM: 602231) small ubiquitin-related modif (103 aa) initn: 458 init1: 458 opt: 500 Z-score: 690.0 bits: 132.5 E(85289): 1.1e-31 Smith-Waterman score: 500; 83.0% identity (91.5% similar) in 94 aa overlap (1-94:1-93) 10 20 30 40 50 60 pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF :..::: : :::::. ::::::::::::::::::::.:::::::::::: .:::..:::: NP_008 MSEEKPKEGVKTEND-HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 10 20 30 40 50 70 80 90 pF1KE6 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY :: ::::. :: ::::::::::::::::: :::: NP_008 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVPESSLAGHSF 60 70 80 90 100 >>NP_001005849 (OMIM: 603042) small ubiquitin-related mo (71 aa) initn: 403 init1: 286 opt: 286 Z-score: 402.6 bits: 78.8 E(85289): 1.1e-15 Smith-Waterman score: 357; 67.4% identity (70.5% similar) in 95 aa overlap (1-95:1-71) 10 20 30 40 50 60 pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF ::.::: : ::::::.::::::::::::::::::::.:::::::::::: NP_001 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE----------- 10 20 30 40 70 80 90 pF1KE6 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY ::::::::::::::: ::::: NP_001 -------------RQLEMEDEDTIDVFQQQTGGVY 50 60 70 >>NP_001273345 (OMIM: 602231) small ubiquitin-related mo (141 aa) initn: 456 init1: 251 opt: 251 Z-score: 350.5 bits: 70.1 E(85289): 8.7e-13 Smith-Waterman score: 406; 59.8% identity (64.6% similar) in 127 aa overlap (6-94:6-131) 10 20 30 40 pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCE----------- : : :::::. ::::::::::::::::::::.:::::::::::: NP_001 MSEEKPKEGVKTEND-HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQVRHLAPPQS 10 20 30 40 50 50 60 70 80 pF1KE6 ---------------------------PRGLSVKQIRFRFGGQPISGTDKPAQLEMEDED :.:::..:::::: ::::. :: :::::::::: NP_001 LPVCALVLCVPGIPRARASRGWTQMQLPEGLSMRQIRFRFDGQPINETDTPAQLEMEDED 60 70 80 90 100 110 90 pF1KE6 TIDVFQQPTGGVY ::::::: :::: NP_001 TIDVFQQQTGGVPESSLAGHSF 120 130 140 >>NP_003343 (OMIM: 601912,613705) small ubiquitin-relate (101 aa) initn: 253 init1: 244 opt: 248 Z-score: 348.7 bits: 69.3 E(85289): 1.1e-12 Smith-Waterman score: 248; 44.0% identity (76.9% similar) in 91 aa overlap (5-93:7-97) 10 20 30 40 50 pF1KE6 MANEKP-TEEV-KTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVK :: ::.. .....:.::: :::.: ..::.: : :.:: ..::. .:. .. NP_003 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 10 20 30 40 50 60 60 70 80 90 pF1KE6 QIRFRFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY ..:: : :: :. . : .: ::.::.:.:.:. ::: NP_003 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV 70 80 90 100 >>NP_001005781 (OMIM: 601912,613705) small ubiquitin-rel (101 aa) initn: 253 init1: 244 opt: 248 Z-score: 348.7 bits: 69.3 E(85289): 1.1e-12 Smith-Waterman score: 248; 44.0% identity (76.9% similar) in 91 aa overlap (5-93:7-97) 10 20 30 40 50 pF1KE6 MANEKP-TEEV-KTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVK :: ::.. .....:.::: :::.: ..::.: : :.:: ..::. .:. .. NP_001 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 10 20 30 40 50 60 60 70 80 90 pF1KE6 QIRFRFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY ..:: : :: :. . : .: ::.::.:.:.:. ::: NP_001 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV 70 80 90 100 >>NP_001005782 (OMIM: 601912,613705) small ubiquitin-rel (76 aa) initn: 214 init1: 214 opt: 214 Z-score: 304.6 bits: 60.8 E(85289): 3.1e-10 Smith-Waterman score: 214; 43.1% identity (76.4% similar) in 72 aa overlap (22-93:1-72) 10 20 30 40 50 60 pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF .. ::.: ..::.: : :.:: ..::. .:. ....:: NP_001 MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF 10 20 30 70 80 90 pF1KE6 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY : :: :. . : .: ::.::.:.:.:. ::: NP_001 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV 40 50 60 70 >>NP_116204 (OMIM: 614525) NFATC2-interacting protein [H (419 aa) initn: 190 init1: 130 opt: 168 Z-score: 230.6 bits: 49.5 E(85289): 4.2e-06 Smith-Waterman score: 168; 36.4% identity (74.0% similar) in 77 aa overlap (12-87:342-418) 10 20 30 40 pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDG-SVVQFKIKRQTPL ::......:.: :.. .... ...:..:: NP_116 ELSPTATPRTLKLGVADIIDCVVLTSSPEATETSQQLQLRVQGKEKHQTLEVSLSRDSPL 320 330 340 350 360 370 50 60 70 80 90 pF1KE6 SKLMKAYCEPRGLSVKQIRFRFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY . ::. : : ::: ... : : : .:: . ::.: ::. : :.:. NP_116 KTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG 380 390 400 410 95 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:06:02 2016 done: Tue Nov 8 14:06:03 2016 Total Scan time: 3.220 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]