FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1944, 500 aa 1>>>pF1KE1944 500 - 500 aa - 500 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.4689+/-0.00102; mu= -2.5767+/- 0.061 mean_var=360.0171+/-72.437, 0's: 0 Z-trim(115.7): 32 B-trim: 125 in 1/52 Lambda= 0.067595 statistics sampled from 16256 (16277) to 16256 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.5), width: 16 Scan time: 4.150 The best scores are: opt bits E(32554) CCDS34463.1 NFKBIE gene_id:4794|Hs108|chr6 ( 500) 3408 346.0 5.6e-95 CCDS12642.2 BCL3 gene_id:602|Hs108|chr19 ( 454) 592 71.4 2.4e-12 >>CCDS34463.1 NFKBIE gene_id:4794|Hs108|chr6 (500 aa) initn: 3408 init1: 3408 opt: 3408 Z-score: 1818.6 bits: 346.0 E(32554): 5.6e-95 Smith-Waterman score: 3408; 100.0% identity (100.0% similar) in 500 aa overlap (1-500:1-500) 10 20 30 40 50 60 pF1KE1 MNQRRSESRPGNHRLQAYAEPGKGDSGGAGPLSGSARRGRGGGGAIRVRRPCWSGGAGRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MNQRRSESRPGNHRLQAYAEPGKGDSGGAGPLSGSARRGRGGGGAIRVRRPCWSGGAGRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GGPAWAVRLPTVTAGWTWPALRTLSSLRAGPSEPHSPGRRPPRAGRPLCQADPQPGKAAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 GGPAWAVRLPTVTAGWTWPALRTLSSLRAGPSEPHSPGRRPPRAGRPLCQADPQPGKAAR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RSLEPDPAQTGPRPARAAGMSEARKGPDEAEESQYDSGIESLRSLRSLPESTSAPASGPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 RSLEPDPAQTGPRPARAAGMSEARKGPDEAEESQYDSGIESLRSLRSLPESTSAPASGPS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 DGSPQPCTHPPGPVKEPQEKEDADGERADSTYGSSSLTYTLSLLGGPEAEDPAPRLPLPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 DGSPQPCTHPPGPVKEPQEKEDADGERADSTYGSSSLTYTLSLLGGPEAEDPAPRLPLPH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 VGALSPQQLEALTYISEDGDTLVHLAVIHEAPAVLLCCLALLPQEVLDIQNNLYQTALHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 VGALSPQQLEALTYISEDGDTLVHLAVIHEAPAVLLCCLALLPQEVLDIQNNLYQTALHL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 AVHLDQPGAVRALVLKGASRALQDRHGDTALHVACQRQHLACARCLLEGRPEPGRGTSHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 AVHLDQPGAVRALVLKGASRALQDRHGDTALHVACQRQHLACARCLLEGRPEPGRGTSHS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 LDLQLQNWQGLACLHIATLQKNQPLMELLLRNGADIDVQEGTSGKTALHLAVETQERGLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 LDLQLQNWQGLACLHIATLQKNQPLMELLLRNGADIDVQEGTSGKTALHLAVETQERGLV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 QFLLQAGAQVDARMLNGCTPLHLAAGRGLMGISSTLCKAGADSLLRNVEDETPQDLTEES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 QFLLQAGAQVDARMLNGCTPLHLAAGRGLMGISSTLCKAGADSLLRNVEDETPQDLTEES 430 440 450 460 470 480 490 500 pF1KE1 LVLLPFDDLKISGKLLLCTD :::::::::::::::::::: CCDS34 LVLLPFDDLKISGKLLLCTD 490 500 >>CCDS12642.2 BCL3 gene_id:602|Hs108|chr19 (454 aa) initn: 513 init1: 324 opt: 592 Z-score: 335.0 bits: 71.4 E(32554): 2.4e-12 Smith-Waterman score: 592; 39.0% identity (59.1% similar) in 328 aa overlap (163-473:35-345) 140 150 160 170 180 pF1KE1 RPARAAGMSEARKGPDEAEESQYDSGIESLRSLRSLPESTSAP--ASG---PSDGSPQPC : ::. .:: :.: : : : CCDS12 PAGAMDEGPVDLRTRPKAAGLPGAALPLRKRPLRAPSPEPAAPRGAAGLVVPLDPLRGGC 10 20 30 40 50 60 190 200 210 220 230 240 pF1KE1 THP--PGPVKEPQEKEDADGERADSTYGSSSLT--YTLSLLGGPEAEDPAPRLPLPHVGA : ::: :. : .. : ..: : .:.: : :: : CCDS12 DLPAVPGP---PH-----GLARPEALYYPGALLPLYPTRAMGSPF---PLVNLPTPLYPM 70 80 90 100 110 250 260 270 280 290 pF1KE1 LSPQQ------LEALTYISEDGDTLVHLAVIH-EAPAVL-LCCLALLPQEVLDIQNNLYQ . :.. . : .::::: .:.::.. . ::: : : . ::: ::: : CCDS12 MCPMEHPLSADIAMATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ 120 130 140 150 160 170 300 310 320 330 340 350 pF1KE1 TALHLAVHLDQPGAVRALVLKGASRALQDRHGDTALHVACQRQHLACARCLLEGRPEPGR : ::::: :..:: :: ::: ::::.:: :.::... .: : ::.. :: CCDS12 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS-AAPG- 180 190 200 210 220 230 360 370 380 390 400 410 pF1KE1 GTSHSLDLQLQNWQGLACLHIATLQKNQPLMELLLRNGADIDVQEGTSGKTALHLAVETQ .:::. .:..::. ::.:. . : ..:::. :::::. . ::.. : :::.. CCDS12 ----TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN 240 250 260 270 280 420 430 440 450 460 470 pF1KE1 ERGLVQFLLQAGAQVDARMLNGCTPLHLAAGRGLMGISSTLCKAGADSLLRNVEDETPQD ..::.::: ::.:.:.: .: . :: :.::::. . :: ..:::: :.: ...:: CCDS12 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 290 300 310 320 330 340 480 490 500 pF1KE1 LTEESLVLLPFDDLKISGKLLLCTD CCDS12 VARSRRVIDILRGKATRPASTSQPDPSPDRSANTSPESSSRLSSNGLLSASPSSSPSQSP 350 360 370 380 390 400 500 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 11:19:02 2016 done: Sun Nov 6 11:19:02 2016 Total Scan time: 4.150 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]