FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1694, 201 aa 1>>>pF1KE1694 201 - 201 aa - 201 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7834+/-0.000614; mu= 13.0029+/- 0.037 mean_var=96.3693+/-19.805, 0's: 0 Z-trim(114.8): 25 B-trim: 918 in 1/50 Lambda= 0.130649 statistics sampled from 15294 (15313) to 15294 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.47), width: 16 Scan time: 2.370 The best scores are: opt bits E(32554) CCDS34397.1 NCR3 gene_id:259197|Hs108|chr6 ( 201) 1386 270.2 5.9e-73 CCDS47402.1 NCR3 gene_id:259197|Hs108|chr6 ( 190) 1125 221.0 3.6e-58 CCDS47401.1 NCR3 gene_id:259197|Hs108|chr6 ( 177) 1106 217.4 4.1e-57 >>CCDS34397.1 NCR3 gene_id:259197|Hs108|chr6 (201 aa) initn: 1386 init1: 1386 opt: 1386 Z-score: 1423.3 bits: 270.2 E(32554): 5.9e-73 Smith-Waterman score: 1386; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV 130 140 150 160 170 180 190 200 pF1KE1 PAPLPPPCGSSAHLLPPVPGG ::::::::::::::::::::: CCDS34 PAPLPPPCGSSAHLLPPVPGG 190 200 >>CCDS47402.1 NCR3 gene_id:259197|Hs108|chr6 (190 aa) initn: 1119 init1: 1119 opt: 1125 Z-score: 1157.7 bits: 221.0 E(32554): 3.6e-58 Smith-Waterman score: 1125; 90.5% identity (92.6% similar) in 190 aa overlap (1-186:1-190) 10 20 30 40 50 60 pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPR---RQLP :::::::::::::::::::::::::::::::::::::::::::::: : . . : CCDS47 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCHCHMGTHCHSSDGP 130 140 150 160 170 180 180 190 200 pF1KE1 -AVVPAPLPPPCGSSAHLLPPVPGG .:.: : : CCDS47 RGVIPEPRCP 190 >>CCDS47401.1 NCR3 gene_id:259197|Hs108|chr6 (177 aa) initn: 1106 init1: 1106 opt: 1106 Z-score: 1138.8 bits: 217.4 E(32554): 4.1e-57 Smith-Waterman score: 1106; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165) 10 20 30 40 50 60 pF1KE1 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MAWMLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 VPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKCLTWKGPRRQLPAVV ::::::::::::::::::::::::::::::::::::::::::::: CCDS47 NGTRLVVEKEHPQLGAGTVLLLRAGFYAVSFLSVAVGSTVYYQGKYAKSTLSGFPQL 130 140 150 160 170 190 200 pF1KE1 PAPLPPPCGSSAHLLPPVPGG 201 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 11:19:37 2016 done: Sun Nov 6 11:19:38 2016 Total Scan time: 2.370 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]