FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9603, 207 aa 1>>>pF1KE9603 207 - 207 aa - 207 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9723+/-0.000415; mu= 6.7702+/- 0.026 mean_var=132.2396+/-25.128, 0's: 0 Z-trim(115.4): 70 B-trim: 0 in 0/57 Lambda= 0.111530 statistics sampled from 25803 (25873) to 25803 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.303), width: 16 Scan time: 6.560 The best scores are: opt bits E(85289) NP_005314 (OMIM: 142712) histone H1t [Homo sapiens ( 207) 1233 209.3 3.7e-54 NP_005312 (OMIM: 142220) histone H1.4 [Homo sapien ( 219) 567 102.1 7e-22 NP_005316 (OMIM: 142709) histone H1.1 [Homo sapien ( 215) 558 100.7 1.9e-21 NP_005313 (OMIM: 142711) histone H1.5 [Homo sapien ( 226) 529 96.0 5e-20 NP_005310 (OMIM: 142710) histone H1.2 [Homo sapien ( 213) 523 95.0 9.3e-20 NP_005311 (OMIM: 142210) histone H1.3 [Homo sapien ( 221) 512 93.3 3.3e-19 NP_005309 (OMIM: 142708) histone H1.0 [Homo sapien ( 194) 282 56.2 4.1e-08 NP_006017 (OMIM: 602785) histone H1x [Homo sapiens ( 213) 224 46.9 2.8e-05 >>NP_005314 (OMIM: 142712) histone H1t [Homo sapiens] (207 aa) initn: 1233 init1: 1233 opt: 1233 Z-score: 1093.3 bits: 209.3 E(85289): 3.7e-54 Smith-Waterman score: 1233; 99.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207) 10 20 30 40 50 60 pF1KE9 MSETVPAASASAGLAAMEKLPTKKRGRKPAGLISASRKVPNLSVSKLITEALSVSQERVG :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: NP_005 MSETVPAASASAGVAAMEKLPTKKRGRKPAGLISASRKVPNLSVSKLITEALSVSQERVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 MSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKST 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 RSKAKKSVSAKTKKLVLSRDSKSPKTAKTNKRAKKPRATTPKTVRSGRKAKGAKGKQKQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: NP_005 RSKAKKSVSAKTKKLVLSRDSKSPKTAKTNKRAKKPRATTPKTVRSGRKAKGAKGKQQQK 130 140 150 160 170 180 190 200 pF1KE9 SPVKARASKSKLTQHHEVNVRKATSKK ::::::::::::::::::::::::::: NP_005 SPVKARASKSKLTQHHEVNVRKATSKK 190 200 >>NP_005312 (OMIM: 142220) histone H1.4 [Homo sapiens] (219 aa) initn: 670 init1: 396 opt: 567 Z-score: 513.8 bits: 102.1 E(85289): 7e-22 Smith-Waterman score: 594; 53.4% identity (74.9% similar) in 219 aa overlap (1-207:1-213) 10 20 30 40 50 60 pF1KE9 MSETVPAASASAGLAAMEKLPTKKRGRKPAGLISASRKVPNLSVSKLITEALSVSQERVG ::::.::: :. : :: :.::..:: :: .:.::. . ::.:::.:...:.:: : NP_005 MSETAPAAPAAP--APAEKTPVKKKARKSAG--AAKRKASGPPVSELITKAVAASKERSG 10 20 30 40 50 70 80 90 100 110 120 pF1KE9 MSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKST .::.::::::::::::::::::::::.:::::.:: ::::.::::::::::.::. . NP_005 VSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEA 60 70 80 90 100 110 130 140 150 160 pF1KE9 RSKAKKSVSAKTKKLVLSRDSKSPKTA-----------KTNKRAKKPRATT-PKTVRSGR . ::::. .::.:: . . .:.:: : :: :.:::: :.. : ..: . NP_005 KPKAKKAGAAKAKKPAGA--AKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPK 120 130 140 150 160 170 170 180 190 200 pF1KE9 KAKGAKGKQKQKSPVKARASKSKLTQHHEVNVRKATSKK :::.:: :. :::.::.: : : .. . .. . : :: NP_005 KAKAAKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK 180 190 200 210 >>NP_005316 (OMIM: 142709) histone H1.1 [Homo sapiens] (215 aa) initn: 489 init1: 353 opt: 558 Z-score: 506.1 bits: 100.7 E(85289): 1.9e-21 Smith-Waterman score: 558; 53.1% identity (73.7% similar) in 213 aa overlap (1-207:1-209) 10 20 30 40 50 pF1KE9 MSETVPAASASAGLAAMEKLPTKKRGRKPAGLISASRKVP-NLSVSKLITEALSVSQERV :::::: : :.. :: :: . :...::: .::.: : . :::.::..: : :.:: NP_005 MSETVPPAPAAS--AAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERG 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 GMSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKS :.::.::::::::::::::::::::::..::::.:: ::::.::::::::::.::. NP_005 GVSLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 TRSKAKKSVSAKTKKLVLSRDSK-----SPKTAKTNKRAKKPRATTPKTVRSGRKAKGAK :. :.: :..::: :. : : :..:: :.:::: :.: :. .. .: : .: NP_005 TKPGASK-VATKTKATGASKKLKKATGASKKSVKTPKKAKKP-AATRKSSKNPKKPKTVK 120 130 140 150 160 170 180 190 200 pF1KE9 GKQKQKSPVKARASKSKLTQHHEVNVRKATSKK :. :::.::.: : : .. . .. . : :: NP_005 PKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK 180 190 200 210 >>NP_005313 (OMIM: 142711) histone H1.5 [Homo sapiens] (226 aa) initn: 462 init1: 462 opt: 529 Z-score: 480.6 bits: 96.0 E(85289): 5e-20 Smith-Waterman score: 567; 51.9% identity (75.0% similar) in 216 aa overlap (1-206:1-214) 10 20 30 40 50 pF1KE9 MSETVPAASASAGLAAMEKLPTKKRG-RKPAGLISASRKVPNLSVSKLITEALSVSQERV ::::.:: .:. : .:: :.::.. .: :: .:.::. . ::.:::.:...:.:: NP_005 MSETAPAETATP--APVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERN 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 GMSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKS :.::.::::::::.:::::::::::::.:::::.:: ::::.::::::::::.::. NP_005 GLSLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 TRSKAKKSVSAKTKKLVLSRDSKSPKTA-------KTNKRAKKPRATTPKTV-RSGRKAK .. ::::. .::.:: . . .:. :.: :: :.:::: :. : : .: .::: NP_005 AKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAK 120 130 140 150 160 170 180 190 200 pF1KE9 GA-KGKQKQKSPVKARASKSKLTQHHEVNVRKATSKK .: : :. :::.: .: : : .. . .. . : : NP_005 AAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK 180 190 200 210 220 >>NP_005310 (OMIM: 142710) histone H1.2 [Homo sapiens] (213 aa) initn: 531 init1: 379 opt: 523 Z-score: 475.7 bits: 95.0 E(85289): 9.3e-20 Smith-Waterman score: 552; 52.7% identity (73.2% similar) in 220 aa overlap (1-207:1-212) 10 20 30 40 50 60 pF1KE9 MSETVPAASASAGLAAMEKLPTKKRGRKPAGLISASRKVPNLSVSKLITEALSVSQERVG ::::.::: :.: : :: :.::.. : :: .. ::. . ::.:::.:...:.:: : NP_005 MSETAPAAPAAAPPA--EKAPVKKKAAKKAG--GTPRKASGPPVSELITKAVAASKERSG 10 20 30 40 50 70 80 90 100 110 120 pF1KE9 MSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKST .::.::::::::::::::::::::::.:::::.:: ::::.::::::::::.::. . NP_005 VSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEA 60 70 80 90 100 110 130 140 150 160 pF1KE9 RSKAKKSVSAKTKKLVLSRDSKSPKTA-----------KTNKRAKKPRATT--PKTVRSG . :.::. ..: :: : . .:.:: : :: :.:::: :.: :...: NP_005 KPKVKKAGGTKPKKPVGA--AKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSP 120 130 140 150 160 170 170 180 190 200 pF1KE9 RKAKGAKGKQKQKSPVKARASKSKLTQHHEVNVRKATSKK .::: :: :. :: :.: : : .. . :. .::. :: NP_005 KKAKVAKPKKAAKSA--AKAVKPKAAKPKVVKPKKAAPKKK 180 190 200 210 >>NP_005311 (OMIM: 142210) histone H1.3 [Homo sapiens] (221 aa) initn: 522 init1: 405 opt: 512 Z-score: 465.9 bits: 93.3 E(85289): 3.3e-19 Smith-Waterman score: 535; 49.1% identity (72.9% similar) in 218 aa overlap (1-207:1-215) 10 20 30 40 50 60 pF1KE9 MSETVPAASASAGLAAMEKLPTKKRGRKPAGLISASRKVPNLSVSKLITEALSVSQERVG ::::.: : . : :: :.::...: :: ...::. . ::.:::.:...:.:: : NP_005 MSETAPLAPTIP--APAEKTPVKKKAKK-AGATAGKRKASGPPVSELITKAVAASKERSG 10 20 30 40 50 70 80 90 100 110 120 pF1KE9 MSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKST .::.::::::::::::::::::::::.:::::.:: ::::.::::::::::.::. NP_005 VSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEG 60 70 80 90 100 110 130 140 150 160 pF1KE9 RSKAKKSVSAKTKKLV-LSRDSK------SPKTA--KTNKRAKKPR--ATTPKTVRSGRK . ::::. .:: .: . .. : .:: . :: :..::: : : :...:..: NP_005 KPKAKKAGAAKPRKPAGAAKKPKKVAGAATPKKSIKKTPKKVKKPATAAGTKKVAKSAKK 120 130 140 150 160 170 170 180 190 200 pF1KE9 AKGAKGKQKQKSPVKARASKSKLTQHHEVNVRKATSKK .: . :. :::.::.: : : .. . . . . .:: NP_005 VKTPQPKKAAKSPAKAKAPKPKAAKPKSGKPKVTKAKKAAPKKK 180 190 200 210 220 >>NP_005309 (OMIM: 142708) histone H1.0 [Homo sapiens] (194 aa) initn: 303 init1: 151 opt: 282 Z-score: 266.7 bits: 56.2 E(85289): 4.1e-08 Smith-Waterman score: 282; 32.6% identity (65.3% similar) in 193 aa overlap (17-207:1-188) 10 20 30 40 50 60 pF1KE9 MSETVPAASASAGLAAMEKLPTKKRGRKPAGLISASRKVPNLSVSKLITEALSVSQERVG : . :. . :: ...... . . : .:. :... ..:.: NP_005 MTENSTSAPAAKPKRAKASKKSTDHPKYSDMIVAAIQAEKNRAG 10 20 30 40 70 80 90 100 110 pF1KE9 MSLVALKKALAAAGYDVEKN-NSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKS : ...: . . : : .: .:.::::.: ::. :.: ::.:.::::::.:.:. :: NP_005 SSRQSIQKYIKSH-YKVGENADSQIKLSIKRLVTTGVLKQTKGVGASGSFRLAKSDEPK- 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE9 TRSKAKKSVSAKTKKLVLSRDSKSPKTAKTNKRAKKPRATTPKTVRSGRKAKGAKGKQKQ .: : :... . ::.. . ...:: : .. .:::.:: : .. .: .. : :. NP_005 -KSVAFKKTKKEIKKVATPKKASKPKKAASKAPTKKPKATPVKKAK--KKLAATPKKAKK 110 120 130 140 150 180 190 200 pF1KE9 KSPVKARASK-SKLTQHHEVNVRKATSKK . :::. : :: . . :. . .: : NP_005 PKTVKAKPVKASKPKKAKPVKPKAKSSAKRAGKKK 160 170 180 190 >>NP_006017 (OMIM: 602785) histone H1x [Homo sapiens] (213 aa) initn: 167 init1: 167 opt: 224 Z-score: 215.7 bits: 46.9 E(85289): 2.8e-05 Smith-Waterman score: 231; 28.4% identity (60.3% similar) in 204 aa overlap (1-202:17-207) 10 20 30 40 pF1KE9 MSETVPAASASAGLAAMEKLPTKKRGRKPAGLISASRKVPNLSV :.. : :..::.:. :.::: : ... :. . NP_006 MSVELEEALPVTTAEGMAKKVTKAGGSAALS-----PSKKRKN------SKKKNQPG-KY 10 20 30 40 50 60 70 80 90 100 pF1KE9 SKLITEALSVSQERVGMSLVAL-KKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGT :.:..:.. :: : ::. . .: . .: ... . .: :.:.::.. :.:..:: NP_006 SQLVVETIRRLGERNGSSLAKIYTEAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGT 50 60 70 80 90 100 110 120 130 140 150 160 pF1KE9 GASGSFKLSKKVIPKSTRSKAKKSVSAKTKKLVLSRDSKSPKTAKTNKRAKKP-RATTPK ::.:::::..: . . . .. .... . . . .: .: . . ::: :. :. NP_006 GANGSFKLNRKKLEGGGERRGAPAAATAPAPTAHKAKKAAPGAAGSRRADKKPARGQKPE 110 120 130 140 150 160 170 180 190 200 pF1KE9 TVRSGRKAKGAKGKQKQKSPVKARASKSKLTQHHEVNVRKATSKK :: .:. ::: . :. : :. .:. . . .: : NP_006 Q-RSHKKGAGAKKDKGGKAKKTAAAGGKKVKKAAKPSVPKVPKGRK 170 180 190 200 210 207 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:29:20 2016 done: Sun Nov 6 06:29:21 2016 Total Scan time: 6.560 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]