FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5232, 251 aa 1>>>pF1KE5232 251 - 251 aa - 251 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.0714+/-0.000301; mu= -1.8808+/- 0.019 mean_var=211.9296+/-42.909, 0's: 0 Z-trim(124.0): 18 B-trim: 416 in 1/57 Lambda= 0.088101 statistics sampled from 44834 (44852) to 44834 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.526), width: 16 Scan time: 6.250 The best scores are: opt bits E(85289) NP_004485 (OMIM: 600339) hepatoma-derived growth f ( 240) 719 102.9 5.3e-22 XP_011507755 (OMIM: 600339) PREDICTED: hepatoma-de ( 208) 598 87.5 2e-17 NP_001306116 (OMIM: 600339) hepatoma-derived growt ( 208) 598 87.5 2e-17 XP_011507756 (OMIM: 600339) PREDICTED: hepatoma-de ( 208) 598 87.5 2e-17 NP_001306117 (OMIM: 600339) hepatoma-derived growt ( 208) 598 87.5 2e-17 XP_011507757 (OMIM: 600339) PREDICTED: hepatoma-de ( 208) 598 87.5 2e-17 NP_001119523 (OMIM: 600339) hepatoma-derived growt ( 233) 598 87.6 2.2e-17 NP_001119522 (OMIM: 600339) hepatoma-derived growt ( 256) 598 87.6 2.4e-17 NP_001306115 (OMIM: 600339) hepatoma-derived growt ( 263) 559 82.6 7.5e-16 NP_001304829 (OMIM: 603620) PC4 and SFRS1-interact ( 324) 459 70.0 5.9e-12 NP_057157 (OMIM: 616643) hepatoma-derived growth f ( 203) 449 68.6 9.9e-12 XP_006720617 (OMIM: 616643) PREDICTED: hepatoma-de ( 212) 449 68.6 1e-11 NP_001304827 (OMIM: 603620) PC4 and SFRS1-interact ( 329) 451 69.0 1.2e-11 NP_066967 (OMIM: 603620) PC4 and SFRS1-interacting ( 333) 451 69.0 1.2e-11 NP_001121689 (OMIM: 603620) PC4 and SFRS1-interact ( 530) 451 69.1 1.8e-11 NP_150091 (OMIM: 603620) PC4 and SFRS1-interacting ( 530) 451 69.1 1.8e-11 >>NP_004485 (OMIM: 600339) hepatoma-derived growth facto (240 aa) initn: 791 init1: 450 opt: 719 Z-score: 516.0 bits: 102.9 E(85289): 5.3e-22 Smith-Waterman score: 816; 57.4% identity (70.5% similar) in 251 aa overlap (9-251:10-240) 10 20 30 40 50 pF1KE5 MSAYGMPMYKSGDLVFAKLKGYAHWPARIEHMTQP------NRYQVFFFGTHETAFLSP :: :::::::.::: ::::::..: . :.::::::::::::::.: NP_004 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGP 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 KRLFPYKECKEKFGKPNKRRGFSAGLWEIENNPTVQASDCPLASEKGSGDGPWPEPEAAE : ::::.: ::::::::::.::: :::::::::::.:: ...:. . : ::::::: NP_004 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 GDEDKPTHAGGGGDELGKPDDDKPTEE--EKGPLKRSAGDPPEDAPKRPKEAAPDQEEEA :: :: .: :..:: :: :.:..: ::: ::: ::: ::.::::::: . :: NP_004 GDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEK 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 EAERAAEAERAAAAAAATAVDEESPFLVAVENGSAPSEPGLVCEPPQPEEEELREEEVAD :: . :.:: :. . ::..:.::::: ::: :::: ::: NP_004 EAA-TLEVER--------------PLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEE--- 190 200 210 220 240 250 pF1KE5 EEASQEWHAEAPGGGDRDSL ::..: ::::: :..:: NP_004 -EATKE-DAEAPGIRDHESL 230 240 >>XP_011507755 (OMIM: 600339) PREDICTED: hepatoma-derive (208 aa) initn: 661 init1: 450 opt: 598 Z-score: 433.8 bits: 87.5 E(85289): 2e-17 Smith-Waterman score: 695; 57.3% identity (70.6% similar) in 218 aa overlap (36-251:11-208) 10 20 30 40 50 60 pF1KE5 MPMYKSGDLVFAKLKGYAHWPARIEHMTQPNRYQVFFFGTHETAFLSPKRLFPYKECKEK :.::::::::::::::.:: ::::.: ::: XP_011 MPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEK 10 20 30 40 70 80 90 100 110 120 pF1KE5 FGKPNKRRGFSAGLWEIENNPTVQASDCPLASEKGSGDGPWPEPEAAEGDEDKPTHAGGG :::::::.::: :::::::::::.:: ...:. . : ::::::::: :: .: :. XP_011 FGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGDGDKKGNAEGS 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE5 GDELGKPDDDKPTEE--EKGPLKRSAGDPPEDAPKRPKEAAPDQEEEAEAERAAEAERAA .:: :: :.:..: ::: ::: ::: ::.::::::: . :: :: . :.:: XP_011 SDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEAA-TLEVER-- 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 AAAAATAVDEESPFLVAVENGSAPSEPGLVCEPPQPEEEELREEEVADEEASQEWHAEAP :. . ::..:.::::: ::: :::: ::: ::..: :::: XP_011 ------------PLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEE----EATKE-DAEAP 160 170 180 190 200 250 pF1KE5 GGGDRDSL : :..:: XP_011 GIRDHESL >>NP_001306116 (OMIM: 600339) hepatoma-derived growth fa (208 aa) initn: 661 init1: 450 opt: 598 Z-score: 433.8 bits: 87.5 E(85289): 2e-17 Smith-Waterman score: 695; 57.3% identity (70.6% similar) in 218 aa overlap (36-251:11-208) 10 20 30 40 50 60 pF1KE5 MPMYKSGDLVFAKLKGYAHWPARIEHMTQPNRYQVFFFGTHETAFLSPKRLFPYKECKEK :.::::::::::::::.:: ::::.: ::: NP_001 MPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEK 10 20 30 40 70 80 90 100 110 120 pF1KE5 FGKPNKRRGFSAGLWEIENNPTVQASDCPLASEKGSGDGPWPEPEAAEGDEDKPTHAGGG :::::::.::: :::::::::::.:: ...:. . : ::::::::: :: .: :. NP_001 FGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGDGDKKGNAEGS 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE5 GDELGKPDDDKPTEE--EKGPLKRSAGDPPEDAPKRPKEAAPDQEEEAEAERAAEAERAA .:: :: :.:..: ::: ::: ::: ::.::::::: . :: :: . :.:: NP_001 SDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEAA-TLEVER-- 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 AAAAATAVDEESPFLVAVENGSAPSEPGLVCEPPQPEEEELREEEVADEEASQEWHAEAP :. . ::..:.::::: ::: :::: ::: ::..: :::: NP_001 ------------PLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEE----EATKE-DAEAP 160 170 180 190 200 250 pF1KE5 GGGDRDSL : :..:: NP_001 GIRDHESL >>XP_011507756 (OMIM: 600339) PREDICTED: hepatoma-derive (208 aa) initn: 661 init1: 450 opt: 598 Z-score: 433.8 bits: 87.5 E(85289): 2e-17 Smith-Waterman score: 695; 57.3% identity (70.6% similar) in 218 aa overlap (36-251:11-208) 10 20 30 40 50 60 pF1KE5 MPMYKSGDLVFAKLKGYAHWPARIEHMTQPNRYQVFFFGTHETAFLSPKRLFPYKECKEK :.::::::::::::::.:: ::::.: ::: XP_011 MPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEK 10 20 30 40 70 80 90 100 110 120 pF1KE5 FGKPNKRRGFSAGLWEIENNPTVQASDCPLASEKGSGDGPWPEPEAAEGDEDKPTHAGGG :::::::.::: :::::::::::.:: ...:. . : ::::::::: :: .: :. XP_011 FGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGDGDKKGNAEGS 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE5 GDELGKPDDDKPTEE--EKGPLKRSAGDPPEDAPKRPKEAAPDQEEEAEAERAAEAERAA .:: :: :.:..: ::: ::: ::: ::.::::::: . :: :: . :.:: XP_011 SDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEAA-TLEVER-- 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 AAAAATAVDEESPFLVAVENGSAPSEPGLVCEPPQPEEEELREEEVADEEASQEWHAEAP :. . ::..:.::::: ::: :::: ::: ::..: :::: XP_011 ------------PLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEE----EATKE-DAEAP 160 170 180 190 200 250 pF1KE5 GGGDRDSL : :..:: XP_011 GIRDHESL >>NP_001306117 (OMIM: 600339) hepatoma-derived growth fa (208 aa) initn: 661 init1: 450 opt: 598 Z-score: 433.8 bits: 87.5 E(85289): 2e-17 Smith-Waterman score: 695; 57.3% identity (70.6% similar) in 218 aa overlap (36-251:11-208) 10 20 30 40 50 60 pF1KE5 MPMYKSGDLVFAKLKGYAHWPARIEHMTQPNRYQVFFFGTHETAFLSPKRLFPYKECKEK :.::::::::::::::.:: ::::.: ::: NP_001 MPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEK 10 20 30 40 70 80 90 100 110 120 pF1KE5 FGKPNKRRGFSAGLWEIENNPTVQASDCPLASEKGSGDGPWPEPEAAEGDEDKPTHAGGG :::::::.::: :::::::::::.:: ...:. . : ::::::::: :: .: :. NP_001 FGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGDGDKKGNAEGS 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE5 GDELGKPDDDKPTEE--EKGPLKRSAGDPPEDAPKRPKEAAPDQEEEAEAERAAEAERAA .:: :: :.:..: ::: ::: ::: ::.::::::: . :: :: . :.:: NP_001 SDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEAA-TLEVER-- 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 AAAAATAVDEESPFLVAVENGSAPSEPGLVCEPPQPEEEELREEEVADEEASQEWHAEAP :. . ::..:.::::: ::: :::: ::: ::..: :::: NP_001 ------------PLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEE----EATKE-DAEAP 160 170 180 190 200 250 pF1KE5 GGGDRDSL : :..:: NP_001 GIRDHESL >>XP_011507757 (OMIM: 600339) PREDICTED: hepatoma-derive (208 aa) initn: 661 init1: 450 opt: 598 Z-score: 433.8 bits: 87.5 E(85289): 2e-17 Smith-Waterman score: 695; 57.3% identity (70.6% similar) in 218 aa overlap (36-251:11-208) 10 20 30 40 50 60 pF1KE5 MPMYKSGDLVFAKLKGYAHWPARIEHMTQPNRYQVFFFGTHETAFLSPKRLFPYKECKEK :.::::::::::::::.:: ::::.: ::: XP_011 MPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEK 10 20 30 40 70 80 90 100 110 120 pF1KE5 FGKPNKRRGFSAGLWEIENNPTVQASDCPLASEKGSGDGPWPEPEAAEGDEDKPTHAGGG :::::::.::: :::::::::::.:: ...:. . : ::::::::: :: .: :. XP_011 FGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGDGDKKGNAEGS 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE5 GDELGKPDDDKPTEE--EKGPLKRSAGDPPEDAPKRPKEAAPDQEEEAEAERAAEAERAA .:: :: :.:..: ::: ::: ::: ::.::::::: . :: :: . :.:: XP_011 SDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEAA-TLEVER-- 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 AAAAATAVDEESPFLVAVENGSAPSEPGLVCEPPQPEEEELREEEVADEEASQEWHAEAP :. . ::..:.::::: ::: :::: ::: ::..: :::: XP_011 ------------PLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEE----EATKE-DAEAP 160 170 180 190 200 250 pF1KE5 GGGDRDSL : :..:: XP_011 GIRDHESL >>NP_001119523 (OMIM: 600339) hepatoma-derived growth fa (233 aa) initn: 661 init1: 450 opt: 598 Z-score: 433.1 bits: 87.6 E(85289): 2.2e-17 Smith-Waterman score: 695; 57.3% identity (70.6% similar) in 218 aa overlap (36-251:36-233) 10 20 30 40 50 60 pF1KE5 MPMYKSGDLVFAKLKGYAHWPARIEHMTQPNRYQVFFFGTHETAFLSPKRLFPYKECKEK :.::::::::::::::.:: ::::.: ::: NP_001 GGNRVQTSTLNCAGAAVIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FGKPNKRRGFSAGLWEIENNPTVQASDCPLASEKGSGDGPWPEPEAAEGDEDKPTHAGGG :::::::.::: :::::::::::.:: ...:. . : ::::::::: :: .: :. NP_001 FGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGDGDKKGNAEGS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GDELGKPDDDKPTEE--EKGPLKRSAGDPPEDAPKRPKEAAPDQEEEAEAERAAEAERAA .:: :: :.:..: ::: ::: ::: ::.::::::: . :: :: . :.:: NP_001 SDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEAA-TLEVER-- 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 AAAAATAVDEESPFLVAVENGSAPSEPGLVCEPPQPEEEELREEEVADEEASQEWHAEAP :. . ::..:.::::: ::: :::: ::: ::..: :::: NP_001 ------------PLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEE----EATKE-DAEAP 190 200 210 220 250 pF1KE5 GGGDRDSL : :..:: NP_001 GIRDHESL 230 >>NP_001119522 (OMIM: 600339) hepatoma-derived growth fa (256 aa) initn: 661 init1: 450 opt: 598 Z-score: 432.5 bits: 87.6 E(85289): 2.4e-17 Smith-Waterman score: 695; 57.3% identity (70.6% similar) in 218 aa overlap (36-251:59-256) 10 20 30 40 50 60 pF1KE5 MPMYKSGDLVFAKLKGYAHWPARIEHMTQPNRYQVFFFGTHETAFLSPKRLFPYKECKEK :.::::::::::::::.:: ::::.: ::: NP_001 GGRRAQIPDVSRATPHTIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEK 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE5 FGKPNKRRGFSAGLWEIENNPTVQASDCPLASEKGSGDGPWPEPEAAEGDEDKPTHAGGG :::::::.::: :::::::::::.:: ...:. . : ::::::::: :: .: :. NP_001 FGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGDGDKKGNAEGS 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE5 GDELGKPDDDKPTEE--EKGPLKRSAGDPPEDAPKRPKEAAPDQEEEAEAERAAEAERAA .:: :: :.:..: ::: ::: ::: ::.::::::: . :: :: . :.:: NP_001 SDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEAA-TLEVER-- 150 160 170 180 190 200 190 200 210 220 230 240 pF1KE5 AAAAATAVDEESPFLVAVENGSAPSEPGLVCEPPQPEEEELREEEVADEEASQEWHAEAP :. . ::..:.::::: ::: :::: ::: ::..: :::: NP_001 ------------PLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEE----EATKE-DAEAP 210 220 230 240 250 pF1KE5 GGGDRDSL : :..:: NP_001 GIRDHESL 250 >>NP_001306115 (OMIM: 600339) hepatoma-derived growth fa (263 aa) initn: 663 init1: 341 opt: 559 Z-score: 405.6 bits: 82.6 E(85289): 7.5e-16 Smith-Waterman score: 678; 56.4% identity (68.9% similar) in 225 aa overlap (36-251:59-263) 10 20 30 40 50 60 pF1KE5 MPMYKSGDLVFAKLKGYAHWPARIEHMTQPNRYQVFFFGTHETAFLSPKRLFPYKECKEK :.::::::::::::::.:: ::::.: ::: NP_001 GGRRAQIPDVSRATPHTIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEK 30 40 50 60 70 80 70 80 90 100 110 pF1KE5 FGKPNKRRGFSAGLWEIENNPTVQASDC-PLAS------EKGSGDGPWPEPEAAEGDEDK :::::::.::: :::::::::::.:: :. : .:. . : ::::::::: :: NP_001 FGKPNKRKGFSEGLWEIENNPTVKASGYQPVLSLLQSSQKKSCVEEPEPEPEAAEGDGDK 90 100 110 120 130 140 120 130 140 150 160 170 pF1KE5 PTHAGGGGDELGKPDDDKPTEE--EKGPLKRSAGDPPEDAPKRPKEAAPDQEEEAEAERA .: :..:: :: :.:..: ::: ::: ::: ::.::::::: . :: :: . NP_001 KGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEAA-T 150 160 170 180 190 200 180 190 200 210 220 230 pF1KE5 AEAERAAAAAAATAVDEESPFLVAVENGSAPSEPGLVCEPPQPEEEELREEEVADEEASQ :.:: :. . ::..:.::::: ::: :::: ::: ::.. NP_001 LEVER--------------PLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEE----EATK 210 220 230 240 240 250 pF1KE5 EWHAEAPGGGDRDSL : ::::: :..:: NP_001 E-DAEAPGIRDHESL 250 260 >>NP_001304829 (OMIM: 603620) PC4 and SFRS1-interacting (324 aa) initn: 457 init1: 280 opt: 459 Z-score: 335.6 bits: 70.0 E(85289): 5.9e-12 Smith-Waterman score: 459; 36.8% identity (62.0% similar) in 234 aa overlap (9-233:5-232) 10 20 30 40 50 pF1KE5 MSAYGMPMYKSGDLVFAKLKGYAHWPARIEHM----TQP--NRYQVFFFGTHETAFLSPK .: :::.:::.::: :::::.... ..: :. .:::::::::::.:: NP_001 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPK 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 RLFPYKECKEKFGKPNKRRGFSAGLWEIENNPTVQASDCPLASEKG--SGDGPWPEPEAA .:::.: :::.::::::.::. :::::.::: :. :. :.... :.: : :.. NP_001 DIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 EGDEDKPTHAGGGGDELGKPDD-DKPTEEEKGPLKRSAGDPPEDAPKRPKEAAPDQEEEA . :: . ...... : : : ..: ::.:: . . ...: . . : NP_001 VSKEDTDHEEKASNEDVTKAVDITTPKAARRGR-KRKAGVVTTATASVNLKVSPKRGRPA 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 EAERAAEAERAAAAAAATAVDEESPFLVAVENGSAPSEPGLVCEPPQPEEEELREEEVAD .: :. . :: ... :. : .. : : ::... ..:: NP_001 ATEVKIPKPRGRPKMVKQPCPSESD-IITEEDKS--KKKGQ--EEKQPKKQPKKDEEGQK 180 190 200 210 220 230 240 250 pF1KE5 EEASQEWHAEAPGGGDRDSL :: NP_001 EEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRKGGRNFQTAHR 240 250 260 270 280 290 251 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:43:57 2016 done: Mon Nov 7 22:43:58 2016 Total Scan time: 6.250 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]