FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7066, 815 aa 1>>>pF1KB7066 815 - 815 aa - 815 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.1245+/-0.00103; mu= -5.7984+/- 0.062 mean_var=316.9222+/-64.829, 0's: 0 Z-trim(114.1): 75 B-trim: 175 in 1/53 Lambda= 0.072044 statistics sampled from 14650 (14714) to 14650 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.452), width: 16 Scan time: 4.330 The best scores are: opt bits E(32554) CCDS34342.1 ATXN1 gene_id:6310|Hs108|chr6 ( 815) 5438 579.4 8.4e-165 CCDS45523.1 ATXN1L gene_id:342371|Hs108|chr16 ( 689) 579 74.3 7.8e-13 >>CCDS34342.1 ATXN1 gene_id:6310|Hs108|chr6 (815 aa) initn: 5438 init1: 5438 opt: 5438 Z-score: 3072.2 bits: 579.4 E(32554): 8.4e-165 Smith-Waterman score: 5438; 100.0% identity (100.0% similar) in 815 aa overlap (1-815:1-815) 10 20 30 40 50 60 pF1KB7 MKSNQERSNECLPPKKREIPATSRSSEEKAPTLPSDNHRVEGTAWLPGNPGGRGHGGGRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MKSNQERSNECLPPKKREIPATSRSSEEKAPTLPSDNHRVEGTAWLPGNPGGRGHGGGRH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 GPAGTSVELGLQQGIGLHKALSTGLDYSPPSAPRSVPVATTLPAAYATPQPGTPVSPVQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 GPAGTSVELGLQQGIGLHKALSTGLDYSPPSAPRSVPVATTLPAAYATPQPGTPVSPVQY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 AHLPHTFQFIGSSQYSGTYASFIPSQLIPPTANPVTSAVASAAGATTPSQRSQLEAYSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 AHLPHTFQFIGSSQYSGTYASFIPSQLIPPTANPVTSAVASAAGATTPSQRSQLEAYSTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 LANMGSLSQTPGHKAEQQQQQQQQQQQQHQHQQQQQQQQQQQQQQHLSRAPGLITPGSPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 LANMGSLSQTPGHKAEQQQQQQQQQQQQHQHQQQQQQQQQQQQQQHLSRAPGLITPGSPP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 PAQQNQYVHISSSPQNTGRTASPPAIPVHLHPHQTMIPHTLTLGPPSQVVMQYADSGSHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 PAQQNQYVHISSSPQNTGRTASPPAIPVHLHPHQTMIPHTLTLGPPSQVVMQYADSGSHF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 VPREATKKAESSRLQQAIQAKEVLNGEMEKSRRYGAPSSADLGLGKAGGKSVPHPYESRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 VPREATKKAESSRLQQAIQAKEVLNGEMEKSRRYGAPSSADLGLGKAGGKSVPHPYESRH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB7 VVVHPSPSDYSSRDPSGVRASVMVLPNSNTPAADLEVQQATHREASPSTLNDKSGLHLGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 VVVHPSPSDYSSRDPSGVRASVMVLPNSNTPAADLEVQQATHREASPSTLNDKSGLHLGK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB7 PGHRSYALSPHTVIQTTHSASEPLPVGLPATAFYAGTQPPVIGYLSGQQQAITYAGSLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 PGHRSYALSPHTVIQTTHSASEPLPVGLPATAFYAGTQPPVIGYLSGQQQAITYAGSLPQ 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB7 HLVIPGTQPLLIPVGSTDMEASGAAPAIVTSSPQFAAVPHTFVTTALPKSENFNPEALVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 HLVIPGTQPLLIPVGSTDMEASGAAPAIVTSSPQFAAVPHTFVTTALPKSENFNPEALVT 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB7 QAAYPAMVQAQIHLPVVQSVASPAAAPPTLPPYFMKGSIIQLANGELKKVEDLKTEDFIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 QAAYPAMVQAQIHLPVVQSVASPAAAPPTLPPYFMKGSIIQLANGELKKVEDLKTEDFIQ 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB7 SAEISNDLKIDSSTVERIEDSHSPGVAVIQFAVGEHRAQVSVEVLVEYPFFVFGQGWSSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 SAEISNDLKIDSSTVERIEDSHSPGVAVIQFAVGEHRAQVSVEVLVEYPFFVFGQGWSSC 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB7 CPERTSQLFDLPCSKLSVGDVCISLTLKNLKNGSVKKGQPVDPASVLLKHSKADGLAGSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 CPERTSQLFDLPCSKLSVGDVCISLTLKNLKNGSVKKGQPVDPASVLLKHSKADGLAGSR 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB7 HRYAEQENGINQGSAQMLSENGELKFPEKMGLPAAPFLTKIEPSKPAATRKRRWSAPESR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 HRYAEQENGINQGSAQMLSENGELKFPEKMGLPAAPFLTKIEPSKPAATRKRRWSAPESR 730 740 750 760 770 780 790 800 810 pF1KB7 KLEKSEDEPPLTLPKPSLIPQEVKICIEGRSNVGK ::::::::::::::::::::::::::::::::::: CCDS34 KLEKSEDEPPLTLPKPSLIPQEVKICIEGRSNVGK 790 800 810 >>CCDS45523.1 ATXN1L gene_id:342371|Hs108|chr16 (689 aa) initn: 916 init1: 565 opt: 579 Z-score: 343.8 bits: 74.3 E(32554): 7.8e-13 Smith-Waterman score: 910; 31.3% identity (54.7% similar) in 830 aa overlap (1-815:1-689) 10 20 30 40 50 pF1KB7 MKSNQERSNECLPPKKREIPATSRSSEEKAPTLPSDNHRVEGTAWLPGNP-GGRGHGGGR :: .:::.::::::::..:.::.. . . . . ... : : .:....:.: CCDS45 MKPVHERSQECLPPKKRDLPVTSEDMGRTTSCSTNHTPSSDASEWSRGVVVAGQSQAGAR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB7 HGPAGTSVE--LGL---QQGIGLHKALSTGLDYSPPSAPRSV---PVATTLPAAYATPQ- . .: ..: :: : :. :.:. .:: . : : :. :. .: . : CCDS45 VSLGGDGAEAITGLTVDQYGM-LYKVAVPPATFSPTGLPSVVNMSPLPPTFNVASSLIQH 70 80 90 100 110 120 130 140 150 160 pF1KB7 PGTPVSPVQYAHLPHT-FQFIGSSQYSGTYA---SFIPSQLIPPTANPVTSAVASAAGAT :: :..::.:: : .::::: :: :: .:.:: :. :.:: .:: . CCDS45 PGIHYPPLHYAQLPSTSLQFIGSP-YSLPYAVPPNFLPSPLLSPSANLATSHL------- 120 130 140 150 160 170 170 180 190 200 210 220 pF1KB7 TPSQRSQLEAYSTLLANMGSLSQTPGHKAEQQQQQQQQQQQQHQHQQQQQQQQQQQQQQH : .. :..:::. :. :: : . :. CCDS45 -P----HFVPYASLLAE-GA---TP---------PPQAPSPAHS---------------- 180 190 230 240 250 260 270 280 pF1KB7 LSRAPGLITPGSPPPAQQNQYVHISSSPQNTGRTASPPAIPVHLHPHQTMIPHTLTLGPP ...::. .:.. : : :..: . .: .:.. . . .:: :: CCDS45 FNKAPSATSPSGQLPH------HSSTQPLDL----APGRMPIYYQMSRLPAGYTLHETPP 200 210 220 230 240 290 300 310 320 330 340 pF1KB7 SQVVMQYADSGSHFVPREATKKAESSRLQQAIQAKEVLNGEMEKSRRYGAPSSADLGLGK : .. ..:.:. . :.. . . . .: : ..:. .:.: : : CCDS45 -------AGASPVLTPQESQSALEAAAANGGQRPRER-NLVRRESEALDSPNSKGEGQGL 250 260 270 280 290 350 360 370 380 390 400 pF1KB7 AGGKSVPHPYESRHVVVHPSPSDYSSRDPSGVRASVMVLPNSNTPAADLEVQQATHREAS :: . :: . . .:. : :. : . . .:: .:::::... :: CCDS45 -----VP----VVECVVDGQLFS-GSQTP---RVEVAAPAHRGTPDTDLEVQRVVGALAS 300 310 320 330 340 410 420 430 440 450 460 pF1KB7 PSTLNDKSGLHLGKPGHRSYALSPHTVI-QTTHSASEPLPVGLPATAFYAGTQPPVIGYL . . : :: :: : .: :. : . : : CCDS45 Q---DYRVVAAQRKEEPSPLNLSHHTPDHQGEGRGSARNPAELAEKSQARGFYP------ 350 360 370 380 390 470 480 490 500 510 520 pF1KB7 SGQQQAITYAGSLPQHLVIPGTQPLLIPVGSTDMEASGAAPAIVTSSPQFAAVPHTFVTT ...:. . . ::. .:. . . :.:.: :: :: : : : . .:.. CCDS45 QSHQEPVKHR-PLPKAMVVANGN--LVPTG-TD---SGLLP--VGS--------EILVAS 400 410 420 430 440 530 540 550 560 570 580 pF1KB7 ALPKSENFNPEALVTQAAYPAMVQAQIHLPVVQSVASPAAAPPTLPPYFMKGSIIQLANG .: :::. .: . . : .. :: .::::.:::::.: CCDS45 SLD-------------------VQARATFPDKEPTPPPITSSH-LPSHFMKGAIIQLATG 450 460 470 480 590 600 610 620 630 640 pF1KB7 ELKKVEDLKTEDFIQSAEISNDLKIDSSTVERIEDSHSPGVAVIQFAVGEHRAQVSVEVL :::.::::.:.::..:::.:. :::::::: :..:. :: ....:.:::....::.:: CCDS45 ELKRVEDLQTQDFVRSAEVSGGLKIDSSTVVDIQESQWPGFVMLHFVVGEQQSKVSIEVP 490 500 510 520 530 540 650 660 670 680 690 700 pF1KB7 VEYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISLTLKNLKNGSVKKGQPVDPAS :.::::.::::::: : ::.:::.::: .:.:::::::..:..:...::.... . :.. CCDS45 PEHPFFVYGQGWSSCSPGRTTQLFSLPCHRLQVGDVCISISLQSLNSNSVSQASCAPPSQ 550 560 570 580 590 600 710 720 730 740 750 760 pF1KB7 VLLKHSKADGLAGSRHRYAEQENGINQGSAQMLSENGELKFPEKMGLPAAPFLTKIEPSK :. :.: : . :: .. . .:. . ::. .:::. CCDS45 ----------LGPPRER---PERTV-LGSRELCDSEGKSQ-------PAGEGSRVVEPSQ 610 620 630 770 780 790 800 810 pF1KB7 PAATRKRRWSAPESRKLEKSEDEPPLTLPKPSLIPQEVKICIEGRSNVGK : . . : :: .. . .: .: .::.::::::. ::::::.:: CCDS45 PESGAQACWPAPSFQRYSMQGEEARAALLRPSFIPQEVKLSIEGRSNAGK 640 650 660 670 680 815 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:19:03 2016 done: Tue Nov 8 04:19:04 2016 Total Scan time: 4.330 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]