FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4021, 209 aa 1>>>pF1KE4021 209 - 209 aa - 209 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8630+/-0.000848; mu= 13.1276+/- 0.051 mean_var=154.2925+/-31.696, 0's: 0 Z-trim(112.3): 124 B-trim: 2 in 1/51 Lambda= 0.103253 statistics sampled from 12951 (13094) to 12951 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.402), width: 16 Scan time: 2.230 The best scores are: opt bits E(32554) CCDS34093.1 TRIM61 gene_id:391712|Hs108|chr4 ( 209) 1472 230.2 7.1e-61 CCDS3808.1 TRIM60 gene_id:166655|Hs108|chr4 ( 471) 828 134.7 8.8e-32 CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 ( 488) 504 86.5 3e-17 CCDS78121.1 RPP21 gene_id:202658|Hs108|chr6 ( 503) 504 86.5 3.1e-17 CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 ( 518) 504 86.5 3.1e-17 CCDS2015.1 TRIM43 gene_id:129868|Hs108|chr2 ( 446) 368 66.2 3.6e-11 >>CCDS34093.1 TRIM61 gene_id:391712|Hs108|chr4 (209 aa) initn: 1472 init1: 1472 opt: 1472 Z-score: 1206.4 bits: 230.2 E(32554): 7.1e-61 Smith-Waterman score: 1472; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209) 10 20 30 40 50 60 pF1KE4 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDLHDSFPCPFCHFCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDLHDSFPCPFCHFCC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 PERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFFCQKDLELLCPRCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 PERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFFCQKDLELLCPRCS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LSTDHQHHCVWPIKKAASYHRKKLEEYNAPWKERVELIEKVITMQTRKSLELKKKMESPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 LSTDHQHHCVWPIKKAASYHRKKLEEYNAPWKERVELIEKVITMQTRKSLELKKKMESPS 130 140 150 160 170 180 190 200 pF1KE4 VTRLECSCTISAHFNLRLPGSSDSSASGS ::::::::::::::::::::::::::::: CCDS34 VTRLECSCTISAHFNLRLPGSSDSSASGS 190 200 >>CCDS3808.1 TRIM60 gene_id:166655|Hs108|chr4 (471 aa) initn: 858 init1: 828 opt: 828 Z-score: 684.1 bits: 134.7 E(32554): 8.8e-32 Smith-Waterman score: 828; 65.5% identity (83.6% similar) in 177 aa overlap (1-177:1-177) 10 20 30 40 50 60 pF1KE4 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDLHDSFPCPFCHFCC :::::::..:. :.::::::.::::::::.:::::: ::. .::::: :.:::: :.:: CCDS38 MEFVTALVNLQEESSCPICLEYLKDPVTINCGHNFCRSCLSVSWKDLDDTFPCPVCRFCF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 PERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFFCQKDLELLCPRCS : ..: :::: .::::::::::: .:::::.:. .:.:::: ::.:: ::::.:: .:: CCDS38 PYKSFRRNPQLRNLTEIAKQLQIRRSKRKRQKENAMCEKHNQFLTLFCVKDLEILCTQCS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LSTDHQHHCVWPIKKAASYHRKKLEEYNAPWKERVELIEKVITMQTRKSLELKKKMESPS .:: ::.: . ::::::::::. :: : .. .: .:::: .: ::.:::::.: CCDS38 FSTKHQKHYICPIKKAASYHREILEGSLEPLRNNIERVEKVIILQGSKSVELKKKVEYKR 130 140 150 160 170 180 190 200 pF1KE4 VTRLECSCTISAHFNLRLPGSSDSSASGS CCDS38 EEINSEFEQIRLFLQNEQEMILRQIQDEEMNILAKLNENLVELSDYVSTLKHLLREVEGK 190 200 210 220 230 240 >>CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 (488 aa) initn: 361 init1: 326 opt: 504 Z-score: 423.1 bits: 86.5 E(32554): 3e-17 Smith-Waterman score: 504; 42.2% identity (71.1% similar) in 173 aa overlap (6-178:19-188) 10 20 30 40 pF1KE4 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDL :: .:..:::: .::.:::.:: : :::::: .:: :.:: CCDS34 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 HDSFPCPFCHFCCPERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFF . .:::: :. :.. : ::::..::::::: . ::: ..:. .: .:...:..: CCDS34 ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQ--AVKRKIRDES-LCPQHHEALSLF 70 80 90 100 110 110 120 130 140 150 160 pF1KE4 CQKDLELLCPRCSLSTDHQHHCVWPIKKAASYHRKKLEEYNAPWKERVELIEKVITMQTR : .: : .: :..: :. : : :. :.. ...::.. : ..... : . . . . CCDS34 CYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEK 120 130 140 150 160 170 170 180 190 200 pF1KE4 KSLELKKKMESPSVTRLECSCTISAHFNLRLPGSSDSSASGS : :::. .:: CCDS34 KPGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKR 180 190 200 210 220 230 >>CCDS78121.1 RPP21 gene_id:202658|Hs108|chr6 (503 aa) initn: 361 init1: 326 opt: 504 Z-score: 422.9 bits: 86.5 E(32554): 3.1e-17 Smith-Waterman score: 504; 42.2% identity (71.1% similar) in 173 aa overlap (6-178:19-188) 10 20 30 40 pF1KE4 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDL :: .:..:::: .::.:::.:: : :::::: .:: :.:: CCDS78 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 HDSFPCPFCHFCCPERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFF . .:::: :. :.. : ::::..::::::: . ::: ..:. .: .:...:..: CCDS78 ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQ--AVKRKIRDES-LCPQHHEALSLF 70 80 90 100 110 110 120 130 140 150 160 pF1KE4 CQKDLELLCPRCSLSTDHQHHCVWPIKKAASYHRKKLEEYNAPWKERVELIEKVITMQTR : .: : .: :..: :. : : :. :.. ...::.. : ..... : . . . . CCDS78 CYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEK 120 130 140 150 160 170 170 180 190 200 pF1KE4 KSLELKKKMESPSVTRLECSCTISAHFNLRLPGSSDSSASGS : :::. .:: CCDS78 KPGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKR 180 190 200 210 220 230 >>CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 (518 aa) initn: 382 init1: 326 opt: 504 Z-score: 422.8 bits: 86.5 E(32554): 3.1e-17 Smith-Waterman score: 504; 42.2% identity (71.1% similar) in 173 aa overlap (6-178:19-188) 10 20 30 40 pF1KE4 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDL :: .:..:::: .::.:::.:: : :::::: .:: :.:: CCDS34 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 HDSFPCPFCHFCCPERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFF . .:::: :. :.. : ::::..::::::: . ::: ..:. .: .:...:..: CCDS34 ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQ--AVKRKIRDES-LCPQHHEALSLF 70 80 90 100 110 110 120 130 140 150 160 pF1KE4 CQKDLELLCPRCSLSTDHQHHCVWPIKKAASYHRKKLEEYNAPWKERVELIEKVITMQTR : .: : .: :..: :. : : :. :.. ...::.. : ..... : . . . . CCDS34 CYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEK 120 130 140 150 160 170 170 180 190 200 pF1KE4 KSLELKKKMESPSVTRLECSCTISAHFNLRLPGSSDSSASGS : :::. .:: CCDS34 KPGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKR 180 190 200 210 220 230 >>CCDS2015.1 TRIM43 gene_id:129868|Hs108|chr2 (446 aa) initn: 271 init1: 252 opt: 368 Z-score: 314.0 bits: 66.2 E(32554): 3.6e-11 Smith-Waterman score: 368; 39.3% identity (62.1% similar) in 145 aa overlap (10-153:9-150) 10 20 30 40 50 60 pF1KE4 MEFVTALADLRAEASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDLHDSFPCPFCHFCC .. : .: :::.:: ::::: :::.:: :. .::.. .. :: :. CCDS20 MDSDFSHAFQKELTCVICLNYLVDPVTICCGHSFCRPCLCLSWEEAQSPANCPACREPS 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 PERKFISNPQLGSLTEIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFFCQKDLELLCPRCS :. : .: : .:. ::.. : . . ::..: : :. .::. : ::: :: CCDS20 PKMDFKTNILLKNLVTIARKA---SLWQFLSSEKQICGTHRQTKKMFCDMDKSLLCLLCS 60 70 80 90 100 110 130 140 150 160 170 pF1KE4 LSTDHQHHCVWPIKKAASYHRKKL-EEYNAPWKERVELIEKVITMQTRKSLELKKKMESP : .: : ::..:: ::.:: ... ::. CCDS20 NSQEHGAHKHHPIEEAAEEHREKLLKQMRILWKKIQENQRNLYEEGRTAFLWRGNVVLRA 120 130 140 150 160 170 180 190 200 pF1KE4 SVTRLECSCTISAHFNLRLPGSSDSSASGS CCDS20 QMIRNEYRKLHPVLHKEEKQHLERLNKEYQEIFQQLQRSWVKMDQKSKHLKEMYQELMEM 180 190 200 210 220 230 209 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:43:24 2016 done: Sat Nov 5 22:43:24 2016 Total Scan time: 2.230 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]