FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1604, 107 aa 1>>>pF1KE1604 107 - 107 aa - 107 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.3725+/-0.000271; mu= 15.0083+/- 0.017 mean_var=57.6250+/-11.230, 0's: 0 Z-trim(119.3): 35 B-trim: 0 in 0/54 Lambda= 0.168954 statistics sampled from 33094 (33133) to 33094 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.388), width: 16 Scan time: 4.600 The best scores are: opt bits E(85289) NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107) 682 173.3 6.7e-44 NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107) 610 155.7 1.3e-38 NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107) 610 155.7 1.3e-38 NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114) 293 78.5 2.5e-15 NP_002695 (OMIM: 121010) platelet basic protein pr ( 128) 275 74.1 5.6e-14 NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 263 71.2 3.9e-13 NP_002610 (OMIM: 173460) platelet factor 4 precurs ( 101) 242 66.0 1.2e-11 NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 235 64.3 4e-11 NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125) 235 64.4 4.7e-11 NP_002611 (OMIM: 173461) platelet factor 4 variant ( 104) 225 61.9 2.2e-10 XP_005265753 (OMIM: 173460) PREDICTED: platelet fa ( 110) 216 59.7 1.1e-09 NP_004878 (OMIM: 604186) C-X-C motif chemokine 14 ( 111) 167 47.8 4.2e-06 NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 ( 98) 160 46.0 1.3e-05 NP_001289052 (OMIM: 604852) C-X-C motif chemokine ( 106) 152 44.1 5.2e-05 NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119) 152 44.1 5.6e-05 NP_005400 (OMIM: 604852) C-X-C motif chemokine 11 ( 94) 147 42.8 0.00011 NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140) 148 43.2 0.00012 NP_954637 (OMIM: 600835,609423) stromal cell-deriv ( 89) 141 41.3 0.00029 NP_000600 (OMIM: 600835,609423) stromal cell-deriv ( 93) 141 41.4 0.0003 XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109) 141 41.4 0.00034 NP_006410 (OMIM: 605149) C-X-C motif chemokine 13 ( 109) 141 41.4 0.00034 >>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu (107 aa) initn: 682 init1: 682 opt: 682 Z-score: 909.1 bits: 173.3 E(85289): 6.7e-44 Smith-Waterman score: 682; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV 10 20 30 40 50 60 70 80 90 100 pF1KE1 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN ::::::::::::::::::::::::::::::::::::::::::::::: NP_002 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 70 80 90 100 >>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu (107 aa) initn: 696 init1: 610 opt: 610 Z-score: 814.3 bits: 155.7 E(85289): 1.3e-38 Smith-Waterman score: 610; 87.9% identity (99.1% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV ::.:::::::::::::::::::::::::::::::: ..:::::::::::::::::::::: NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV 10 20 30 40 50 60 70 80 90 100 pF1KE1 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN .:.::::::::::::::::::.:::::::::::.:::::.:..:..: NP_002 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 70 80 90 100 >>NP_001502 (OMIM: 155730) growth-regulated alpha protei (107 aa) initn: 610 init1: 610 opt: 610 Z-score: 814.3 bits: 155.7 E(85289): 1.3e-38 Smith-Waterman score: 610; 89.7% identity (97.2% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV ::::.:::::::::::::::::::::::.:::::: .:::::::::::::::: :::::: NP_001 MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQTLQGIHPKNIQSV 10 20 30 40 50 60 70 80 90 100 pF1KE1 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN .::::::::::::::::::::.:::::::::.:::::::::.. ::: NP_001 NVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN 70 80 90 100 >>NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 precu (114 aa) initn: 323 init1: 270 opt: 293 Z-score: 396.3 bits: 78.5 E(85289): 2.5e-15 Smith-Waterman score: 293; 44.3% identity (76.4% similar) in 106 aa overlap (2-104:6-110) 10 20 30 40 50 pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLAT---ELRCQCLQTLQGIH .::. .::. : . .:::::. . :...: :. :::: :::: ::.: NP_002 MSLLSSRAARVPGPSSS-LCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVH 10 20 30 40 50 60 70 80 90 100 pF1KE1 LKNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN : :....: . ::.:...::.:.::::.. ::.: .:..::.:.:.: .: NP_002 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN 60 70 80 90 100 110 >>NP_002695 (OMIM: 121010) platelet basic protein prepro (128 aa) initn: 325 init1: 270 opt: 275 Z-score: 371.9 bits: 74.1 E(85289): 5.6e-14 Smith-Waterman score: 275; 48.8% identity (79.3% similar) in 82 aa overlap (25-106:45-126) 10 20 30 40 50 pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHL :. ..... . : .::::.:..: .::: NP_002 RPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHP 20 30 40 50 60 70 60 70 80 90 100 pF1KE1 KNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN :::::..: . : :: :.:::::::.:.: ::.: .: .:::..: : . .: NP_002 KNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD 80 90 100 110 120 >>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu (114 aa) initn: 277 init1: 232 opt: 263 Z-score: 356.8 bits: 71.2 E(85289): 3.9e-13 Smith-Waterman score: 263; 40.4% identity (72.5% similar) in 109 aa overlap (2-107:6-114) 10 20 30 40 50 pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAG--APLATELRCQCLQTLQGIHL .::. .::. .:::::: . .:: . . ::::: ::.. .. NP_002 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP 10 20 30 40 50 60 60 70 80 90 100 pF1KE1 KNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNG-KSN :.: ...: ::.:...::.:.::::...::.: .:..::.:.:.: .: :.: NP_002 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN 70 80 90 100 110 >>NP_002610 (OMIM: 173460) platelet factor 4 precursor [ (101 aa) initn: 192 init1: 156 opt: 242 Z-score: 329.8 bits: 66.0 E(85289): 1.2e-11 Smith-Waterman score: 242; 44.1% identity (72.0% similar) in 93 aa overlap (11-103:10-101) 10 20 30 40 50 60 pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV : : :: ..:::: ::.: : : .:.: :..: . .. ..: :. NP_002 MSSAAGFCASRPGLLFLGLLLLPLVVAFASAE-AEEDGDLQCLCVKTTSQVRPRHITSL 10 20 30 40 50 70 80 90 100 pF1KE1 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN .: . :::: ...:::::::.: ::. .:. ::::.:.:.. NP_002 EVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES 60 70 80 90 100 >>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo (99 aa) initn: 213 init1: 148 opt: 235 Z-score: 320.7 bits: 64.3 E(85289): 4e-11 Smith-Waterman score: 235; 41.7% identity (70.8% similar) in 96 aa overlap (16-107:5-99) 10 20 30 40 50 pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPL---ATELRCQCLQTL-QGIHLKN : :::: .:..:. :: : : ::::::..: . .: : NP_000 MTSKLAVALLAAFLISAAL-CEGAVLPRSAKELRCQCIKTYSKPFHPKF 10 20 30 40 60 70 80 90 100 pF1KE1 IQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN :. ..: :::::.::.:. :..:.. ::.: :....::.:: .... NP_000 IKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 50 60 70 80 90 >>NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 precu (125 aa) initn: 247 init1: 171 opt: 235 Z-score: 319.4 bits: 64.4 E(85289): 4.7e-11 Smith-Waterman score: 235; 41.6% identity (77.5% similar) in 89 aa overlap (15-102:7-91) 10 20 30 40 50 pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQG-IHLKNIQS :. ....::.:.... :.:.. . ::.:..: :: :::..... NP_002 MKKSGVLFLLGIILLVLIGVQ----GTPVVRKGRCSCISTNQGTIHLQSLKD 10 20 30 40 60 70 80 90 100 pF1KE1 VKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN .: .:.: : . :.::::::: ..:::: : ::..:.: : NP_002 LKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKK 50 60 70 80 90 100 NP_002 KVLKVRKSQRSRQKKTT 110 120 >>NP_002611 (OMIM: 173461) platelet factor 4 variant pre (104 aa) initn: 178 init1: 133 opt: 225 Z-score: 307.2 bits: 61.9 E(85289): 2.2e-10 Smith-Waterman score: 225; 40.2% identity (70.6% similar) in 102 aa overlap (2-103:5-104) 10 20 30 40 50 pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNI ::. :. : . ..: .::::: .:.: :: : .:.: :..: . .. ..: NP_002 MSSAARSRLTRA-TRQEMLFLALLLLPVVVAFARAE-AEEDGDLQCLCVKTTSQVRPRHI 10 20 30 40 50 60 70 80 90 100 pF1KE1 QSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN :..: . :::: ...:::::::.: ::. . . ::::.. :.. NP_002 TSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHLES 60 70 80 90 100 107 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 11:56:51 2016 done: Sun Nov 6 11:56:52 2016 Total Scan time: 4.600 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]