Result of FASTA (ccds) for
pFN21AE1604
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1604, 107 aa
1>>>pF1KE1604 107 - 107 aa - 107 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.2818+/-0.000567; mu= 15.7069+/- 0.034
mean_var=59.1853+/-11.758, 0's: 0 Z-trim(112.8): 28 B-trim: 168 in 1/49
Lambda= 0.166712
statistics sampled from 13446 (13474) to 13446 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.414), width: 16
Scan time: 1.610
The best scores are: opt bits E(32554)
CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 ( 107) 682 171.0 1.2e-43
CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 ( 107) 610 153.7 2e-38
CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 ( 107) 610 153.7 2e-38
CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 ( 114) 293 77.5 1.9e-15
CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 ( 128) 275 73.2 4.1e-14
CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4 ( 114) 263 70.3 2.8e-13
CCDS3562.1 PF4 gene_id:5196|Hs108|chr4 ( 101) 242 65.2 8.4e-12
CCDS34005.1 CXCL8 gene_id:3576|Hs108|chr4 ( 99) 235 63.5 2.7e-11
CCDS34014.1 CXCL9 gene_id:4283|Hs108|chr4 ( 125) 235 63.6 3.2e-11
>>CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 (107 aa)
initn: 682 init1: 682 opt: 682 Z-score: 897.0 bits: 171.0 E(32554): 1.2e-43
Smith-Waterman score: 682; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
10 20 30 40 50 60
70 80 90 100
pF1KE1 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
70 80 90 100
>>CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 (107 aa)
initn: 610 init1: 610 opt: 610 Z-score: 803.4 bits: 153.7 E(32554): 2e-38
Smith-Waterman score: 610; 89.7% identity (97.2% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
::::.:::::::::::::::::::::::.:::::: .:::::::::::::::: ::::::
CCDS47 MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQTLQGIHPKNIQSV
10 20 30 40 50 60
70 80 90 100
pF1KE1 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
.::::::::::::::::::::.:::::::::.:::::::::.. :::
CCDS47 NVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN
70 80 90 100
>>CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 (107 aa)
initn: 696 init1: 610 opt: 610 Z-score: 803.4 bits: 153.7 E(32554): 2e-38
Smith-Waterman score: 610; 87.9% identity (99.1% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
::.:::::::::::::::::::::::::::::::: ..::::::::::::::::::::::
CCDS34 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV
10 20 30 40 50 60
70 80 90 100
pF1KE1 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
.:.::::::::::::::::::.:::::::::::.:::::.:..:..:
CCDS34 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN
70 80 90 100
>>CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 (114 aa)
initn: 323 init1: 270 opt: 293 Z-score: 391.0 bits: 77.5 E(32554): 1.9e-15
Smith-Waterman score: 293; 44.3% identity (76.4% similar) in 106 aa overlap (2-104:6-110)
10 20 30 40 50
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLAT---ELRCQCLQTLQGIH
.::. .::. : . .:::::. . :...: :. :::: :::: ::.:
CCDS34 MSLLSSRAARVPGPSSS-LCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVH
10 20 30 40 50
60 70 80 90 100
pF1KE1 LKNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
: :....: . ::.:...::.:.::::.. ::.: .:..::.:.:.: .:
CCDS34 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
60 70 80 90 100 110
>>CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 (128 aa)
initn: 325 init1: 270 opt: 275 Z-score: 366.9 bits: 73.2 E(32554): 4.1e-14
Smith-Waterman score: 275; 48.8% identity (79.3% similar) in 82 aa overlap (25-106:45-126)
10 20 30 40 50
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHL
:. ..... . : .::::.:..: .:::
CCDS35 RPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHP
20 30 40 50 60 70
60 70 80 90 100
pF1KE1 KNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
:::::..: . : :: :.:::::::.:.: ::.: .: .:::..: : . .:
CCDS35 KNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
80 90 100 110 120
>>CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4 (114 aa)
initn: 277 init1: 232 opt: 263 Z-score: 352.0 bits: 70.3 E(32554): 2.8e-13
Smith-Waterman score: 263; 40.4% identity (72.5% similar) in 109 aa overlap (2-107:6-114)
10 20 30 40 50
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAG--APLATELRCQCLQTLQGIHL
.::. .::. .:::::: . .:: . . ::::: ::.. ..
CCDS35 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
10 20 30 40 50 60
60 70 80 90 100
pF1KE1 KNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNG-KSN
:.: ...: ::.:...::.:.::::...::.: .:..::.:.:.: .: :.:
CCDS35 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
70 80 90 100 110
>>CCDS3562.1 PF4 gene_id:5196|Hs108|chr4 (101 aa)
initn: 192 init1: 156 opt: 242 Z-score: 325.3 bits: 65.2 E(32554): 8.4e-12
Smith-Waterman score: 242; 44.1% identity (72.0% similar) in 93 aa overlap (11-103:10-101)
10 20 30 40 50 60
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
: : :: ..:::: ::.: : : .:.: :..: . .. ..: :.
CCDS35 MSSAAGFCASRPGLLFLGLLLLPLVVAFASAE-AEEDGDLQCLCVKTTSQVRPRHITSL
10 20 30 40 50
70 80 90 100
pF1KE1 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
.: . :::: ...:::::::.: ::. .:. ::::.:.:..
CCDS35 EVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
60 70 80 90 100
>>CCDS34005.1 CXCL8 gene_id:3576|Hs108|chr4 (99 aa)
initn: 213 init1: 148 opt: 235 Z-score: 316.4 bits: 63.5 E(32554): 2.7e-11
Smith-Waterman score: 235; 41.7% identity (70.8% similar) in 96 aa overlap (16-107:5-99)
10 20 30 40 50
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPL---ATELRCQCLQTL-QGIHLKN
: :::: .:..:. :: : : ::::::..: . .: :
CCDS34 MTSKLAVALLAAFLISAAL-CEGAVLPRSAKELRCQCIKTYSKPFHPKF
10 20 30 40
60 70 80 90 100
pF1KE1 IQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
:. ..: :::::.::.:. :..:.. ::.: :....::.:: ....
CCDS34 IKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
50 60 70 80 90
>>CCDS34014.1 CXCL9 gene_id:4283|Hs108|chr4 (125 aa)
initn: 247 init1: 171 opt: 235 Z-score: 315.1 bits: 63.6 E(32554): 3.2e-11
Smith-Waterman score: 235; 41.6% identity (77.5% similar) in 89 aa overlap (15-102:7-91)
10 20 30 40 50
pF1KE1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQG-IHLKNIQS
:. ....::.:.... :.:.. . ::.:..: :: :::.....
CCDS34 MKKSGVLFLLGIILLVLIGVQ----GTPVVRKGRCSCISTNQGTIHLQSLKD
10 20 30 40
60 70 80 90 100
pF1KE1 VKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
.: .:.: : . :.::::::: ..:::: : ::..:.: :
CCDS34 LKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKK
50 60 70 80 90 100
CCDS34 KVLKVRKSQRSRQKKTT
110 120
107 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 11:56:50 2016 done: Sun Nov 6 11:56:51 2016
Total Scan time: 1.610 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]