FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5179, 110 aa 1>>>pF1KE5179 110 - 110 aa - 110 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5303+/-0.000332; mu= 13.2845+/- 0.020 mean_var=49.6009+/-10.154, 0's: 0 Z-trim(113.2): 10 B-trim: 632 in 1/56 Lambda= 0.182108 statistics sampled from 22447 (22449) to 22447 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.263), width: 16 Scan time: 3.920 The best scores are: opt bits E(85289) NP_000987 (OMIM: 180468,612528) 60S ribosomal prot ( 110) 737 200.9 3.5e-52 NP_001303240 (OMIM: 180468,612528) 60S ribosomal p ( 110) 737 200.9 3.5e-52 >>NP_000987 (OMIM: 180468,612528) 60S ribosomal protein (110 aa) initn: 737 init1: 737 opt: 737 Z-score: 1057.8 bits: 200.9 E(85289): 3.5e-52 Smith-Waterman score: 737; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110) 10 20 30 40 50 60 pF1KE5 MSGRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MSGRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTP 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 GGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI :::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 GGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 70 80 90 100 110 >>NP_001303240 (OMIM: 180468,612528) 60S ribosomal prote (110 aa) initn: 737 init1: 737 opt: 737 Z-score: 1057.8 bits: 200.9 E(85289): 3.5e-52 Smith-Waterman score: 737; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110) 10 20 30 40 50 60 pF1KE5 MSGRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSGRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTP 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 GGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 70 80 90 100 110 110 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:20:12 2016 done: Mon Nov 7 22:20:13 2016 Total Scan time: 3.920 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]