FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1698, 225 aa 1>>>pF1KE1698 225 - 225 aa - 225 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4798+/-0.000324; mu= 13.2479+/- 0.020 mean_var=69.5551+/-14.162, 0's: 0 Z-trim(116.9): 8 B-trim: 0 in 0/52 Lambda= 0.153784 statistics sampled from 28412 (28420) to 28412 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.333), width: 16 Scan time: 6.490 The best scores are: opt bits E(85289) XP_016861790 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 1590 361.3 7.6e-100 XP_016861791 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 1590 361.3 7.6e-100 NP_001004312 (OMIM: 609138) receptor-transporting ( 225) 1590 361.3 7.6e-100 NP_714919 (OMIM: 609137) receptor-transporting pro ( 263) 1278 292.1 5.9e-79 NP_113628 (OMIM: 607181) receptor-transporting pro ( 232) 381 93.1 4.3e-19 NP_071430 (OMIM: 609350) receptor-transporting pro ( 246) 319 79.3 6.3e-15 >>XP_016861790 (OMIM: 609138) PREDICTED: receptor-transp (225 aa) initn: 1590 init1: 1590 opt: 1590 Z-score: 1913.6 bits: 361.3 E(85289): 7.6e-100 Smith-Waterman score: 1590; 99.6% identity (100.0% similar) in 225 aa overlap (1-225:1-225) 10 20 30 40 50 60 pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: XP_016 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT 130 140 150 160 170 180 190 200 210 220 pF1KE1 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF ::::::::::::::::::::::::::::::::::::::::::::: XP_016 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF 190 200 210 220 >>XP_016861791 (OMIM: 609138) PREDICTED: receptor-transp (225 aa) initn: 1590 init1: 1590 opt: 1590 Z-score: 1913.6 bits: 361.3 E(85289): 7.6e-100 Smith-Waterman score: 1590; 99.6% identity (100.0% similar) in 225 aa overlap (1-225:1-225) 10 20 30 40 50 60 pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: XP_016 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT 130 140 150 160 170 180 190 200 210 220 pF1KE1 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF ::::::::::::::::::::::::::::::::::::::::::::: XP_016 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF 190 200 210 220 >>NP_001004312 (OMIM: 609138) receptor-transporting prot (225 aa) initn: 1590 init1: 1590 opt: 1590 Z-score: 1913.6 bits: 361.3 E(85289): 7.6e-100 Smith-Waterman score: 1590; 99.6% identity (100.0% similar) in 225 aa overlap (1-225:1-225) 10 20 30 40 50 60 pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: NP_001 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT 130 140 150 160 170 180 190 200 210 220 pF1KE1 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF ::::::::::::::::::::::::::::::::::::::::::::: NP_001 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF 190 200 210 220 >>NP_714919 (OMIM: 609137) receptor-transporting protein (263 aa) initn: 1267 init1: 1118 opt: 1278 Z-score: 1538.5 bits: 292.1 E(85289): 5.9e-79 Smith-Waterman score: 1278; 81.8% identity (90.2% similar) in 225 aa overlap (1-221:37-261) 10 20 30 pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELI :: :.:: ::::::::::: :::::::.:: NP_714 WRLRCPALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLI 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE1 IDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAHVVILFHMFLDRARRAGSVRMR :::::: . :.:::::::: ::::::::::::::::: .::::::::::::.:::::::: NP_714 IDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMR 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE1 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYEEDGGQYRIHVASRPDSGPH :::::::::::::::::::::::::::::::::::::::: : ::::::::::: :. : NP_714 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGGQYRIHVASRQDNRRH 130 140 150 160 170 180 160 170 180 190 200 pF1KE1 RAEFCEACQEGIVHWKPSEKLLEEEVTTYT-SEASKP---RAQAGSGYNFLSLRWCLFWA :.:::::::::::::::::::::::.:::: :.: .: . :.:::.:: :. :::::: NP_714 RGEFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWA 190 200 210 220 230 240 210 220 pF1KE1 SLCLLVVYLQFSFLSPAFF .. ::..:::::: : NP_714 TVLLLIIYLQFSFRSSV 250 260 >>NP_113628 (OMIM: 607181) receptor-transporting protein (232 aa) initn: 388 init1: 217 opt: 381 Z-score: 463.7 bits: 93.1 E(85289): 4.3e-19 Smith-Waterman score: 381; 37.6% identity (63.7% similar) in 157 aa overlap (10-161:8-160) 10 20 30 40 50 60 pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW ::..: : :. .:: : : : .: :. : ::: :: .: . .::.:: NP_113 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQY-QQWTFARFQCSS 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN : ..: ::.:..:::: .. . :.:.:::: : : .: ... . .::: .. : NP_113 CSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKN 60 70 80 90 100 110 130 140 150 160 170 pF1KE1 LITSLREQCYEEDGGQYRI--HVASRPD---SGPHRAEFCEACQEGIVHWKPSEKLLEEE :. . ..::. :.... .: : ::: .. :::: .: NP_113 LVFRILKKCYR---GRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPS 120 130 140 150 160 170 180 190 200 210 220 pF1KE1 VTTYTSEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF NP_113 QTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI 180 190 200 210 220 230 >>NP_071430 (OMIM: 609350) receptor-transporting protein (246 aa) initn: 329 init1: 154 opt: 319 Z-score: 389.0 bits: 79.3 E(85289): 6.3e-15 Smith-Waterman score: 331; 31.5% identity (54.0% similar) in 235 aa overlap (10-213:8-240) 10 20 30 40 50 60 pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW :...: : .. ::: .: : .: ::. . :: ::::: .:.: : :.:: NP_071 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQY-QQRAFGWFRCSS 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN : ..: ::.: :: : . .. :.::::.: : : .:. .. . . .. ...: NP_071 CQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSN 60 70 80 90 100 110 130 140 150 160 170 pF1KE1 LITSLREQCYEEDGGQYRIH---VASRPDSGPHRAEFCEACQEGIVHW-------KPSEK :. . .. : .: . . . : : . :::: :: :::.. NP_071 LVQHILKK-YYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKS 120 130 140 150 160 170 180 190 200 pF1KE1 LLEEEVTTYTS----------EASKPRAQA----GSGYNFLS-------LRWCLFWASLC :: . : .: .:.. :.: ::::. :. : :.: : NP_071 LLPHLKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLV 180 190 200 210 220 230 210 220 pF1KE1 LLVVYLQFSFLSPAFF ..:: NP_071 FIVVKCFTSE 240 225 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 11:58:11 2016 done: Sun Nov 6 11:58:12 2016 Total Scan time: 6.490 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]